RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ADAMTS19Q8TE59 1207 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 RBM4BQ9BQ04 359 aaKnown RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 CPPED1Q9BRF8 314 aaPredicted RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 RBM4Q9BWF3 364 aaKnown RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 TM6SF2Q9BZW4 377 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 PAIP1Q9H074 479 aaKnown RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 FANCEQ9HB96 536 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 AREL1O15033 823 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 B4GAT1O43505 415 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 PFDN1O60925 122 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 SEC22BO75396 215 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 ERN1O75460 977 aaKnown RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 STK16O75716 305 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 CLDN7O95471 211 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 BCKDHAP12694 445 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 HOXB9P17482 250 aaPredicted RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 MATN1P21941 496 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 UGT1A1P22309 533 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 UGT1A4P22310 534 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 UGT1A3P35503 534 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 UGT1A5P35504 534 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 GGT5P36269 586 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 SPAM1P38567 509 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 HNRNPFP52597 415 aaKnown RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 GABARAPL2P60520 117 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 CDH18Q13634 790 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 IMPG1Q17R60 797 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 TTLL9Q3SXZ7 439 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 GRAMD4Q6IC98 578 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 RETSATQ6NUM9 610 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 Q6ZNX1 250 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 NXPE1Q8N323 547 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 THAP11Q96EK4 314 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 C2orf49Q9BVC5 232 aaPredicted RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 AMBRA1Q9C0C7 1298 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 TNKS2Q9H2K2 1166 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 SRRDQ9UH36 339 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 EVLQ9UI08 416 aaPredicted RBP12.49□□□□□ -0.41
LINC00540-203ENST00000631321 CRLS1Q9UJA2 301 aa12.49□□□□□ -0.41
LINC00540-203ENST00000631321 A0A096LPI6 279 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 SMAD6O43541 496 aaKnown RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 NOL3O60936 208 aaKnown RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 PCSK2P16519 638 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 EPORP19235 508 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 NFATC3Q12968 1075 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 PON2Q15165 354 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 C6orf141Q5SZD1 244 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 GTF2IRD2BQ6EKJ0 949 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 GTF2IRD2Q86UP8 949 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 CHDHQ8NE62 594 aaPredicted RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 OR5K1Q8NHB7 308 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 SNX19Q92543 992 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 TANKQ92844 425 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 FAM162AQ96A26 154 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ACDQ96AP0 544 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 HSPBAP1Q96EW2 488 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 MAGED4Q96JG8 741 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 OR52E6Q96RD3 313 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 LYSMD1Q96S90 227 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 KCNH6Q9H252 994 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 SMURF2Q9HAU4 748 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ZFP14Q9HCL3 533 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 SERHLQ9NQF3 203 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 TBCCD1Q9NVR7 557 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 KCTD5Q9NXV2 234 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 INVSQ9Y283 1065 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 PLXNA4Q9HCM2 1894 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ANKRD12Q6UB98 2062 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 hCG_2014768A0A024R1R8 64 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 C16orf96A6NNT2 1141 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 NPIPB8E9PQR5 432 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 EIF3FO00303 357 aaPredicted RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 CREG1O75629 220 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 PRKD3O94806 890 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 KRT6AP02538 564 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 KRT6BP04259 564 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 BMP1P13497 986 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 PRPH2P23942 346 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 EEF1B2P24534 225 aaKnown RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 KRT6CP48668 564 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ALDH7A1P49419 539 aaKnown RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 IST1P53990 364 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 CLDN8P56748 225 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 PHC1P78364 1004 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 C16orf72Q14CZ0 275 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 TAF12Q16514 161 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ZNF829Q3KNS6 432 aaPredicted RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 GTDC1Q4AE62 458 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 GGTA1PQ4G0N0 100 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ANKRD26P1Q6NSI1 321 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 TPGS1Q6ZTW0 290 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 R3HCC1LQ7Z5L2 792 aaKnown RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ADHFE1Q8IWW8 467 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 APCDD1Q8J025 514 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ZCCHC7Q8N3Z6 543 aaKnown RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ZNF555Q8NEP9 628 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 OR6K2Q8NGY2 324 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 BORCS5Q969J3 196 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ULK4Q96C45 1275 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 NRBF2Q96F24 287 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms