RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 GOLGA6L6A8MZA4 724 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 E7EVH7 732 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 AP3B1O00203 1094 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 CCL22O00626 93 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 DNAJB5O75953 348 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 OR2B3O76000 313 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 METTL18O95568 372 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 ALPPP05187 535 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 TPH1P17752 444 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 NR1D1P20393 614 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 PTGIRP43119 386 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 LMAN1P49257 510 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 PRKG2Q13237 762 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 SLC5A12Q1EHB4 618 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 ZNF789Q5FWF6 425 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 SEL1L2Q5TEA6 688 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 RHBDD2Q6NTF9 364 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 TLDC1Q6P9B6 456 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 FAM198BQ6UWH4 519 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 RAD9BQ6WBX8 426 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 PIANPQ8IYJ0 282 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 GLIS1Q8NBF1 620 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 PHC3Q8NDX5 983 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 CPT1CQ8TCG5 803 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 ASZ1Q8WWH4 475 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 RNF31Q96EP0 1072 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 FER1L6-AS2Q96M78 137 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 PPM1MQ96MI6 270 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 RANBP9Q96S59 729 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 TMEM121Q9BTD3 319 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 TRIM55Q9BYV6 548 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 SLC29A3Q9BZD2 475 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 GPR83Q9NYM4 423 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 IMPACTQ9P2X3 320 aa11.53□□□□□ -0.56
UPF3B-204ENST00000619445 GPN3Q9UHW5 284 aaPredicted RBP11.53□□□□□ -0.56
UPF3B-204ENST00000619445 REXO2Q9Y3B8 237 aaKnown RBP11.53□□□□□ -0.56
UPF3B-204ENST00000619445 SLC5A10A0PJK1 596 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 K7EM74 188 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 PEX12O00623 359 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 ZNF749O43361 778 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 IPO13O94829 963 aaKnown RBP11.52□□□□□ -0.57
UPF3B-204ENST00000619445 SUN1O94901 812 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 FKBP9O95302 570 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 CHRM5P08912 532 aaPredicted RBP11.52□□□□□ -0.57
UPF3B-204ENST00000619445 UGT2B7P16662 529 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 ADRA1DP25100 572 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 ACADLP28330 430 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 FOXN2P32314 431 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 CDKN1CP49918 316 aaPredicted RBP11.52□□□□□ -0.57
UPF3B-204ENST00000619445 MLLT10P55197 1068 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 DCDP81605 110 aaKnown RBP11.52□□□□□ -0.57
UPF3B-204ENST00000619445 SSPNQ14714 243 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 CPZQ66K79 652 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 FBXO38Q6PIJ6 1188 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 C4orf22Q6V702 233 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 PPP1R21Q6ZMI0 780 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 UNC5AQ6ZN44 842 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 CDHR3Q6ZTQ4 885 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 ACRBPQ8NEB7 543 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 NAT14Q8WUY8 206 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 DLG3Q92796 817 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 HES6Q96HZ4 224 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 VPS50Q96JG6 964 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 RUFY1Q96T51 708 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 TSGA10Q9BZW7 698 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 TXLNGQ9NUQ3 528 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 INTS7Q9NVH2 962 aaKnown RBP11.52□□□□□ -0.57
UPF3B-204ENST00000619445 ANAPC5Q9UJX4 755 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 ICKQ9UPZ9 632 aa11.52□□□□□ -0.57
UPF3B-204ENST00000619445 TNRC6AQ8NDV7 1962 aaKnown RBP11.51□□□□□ -0.57
UPF3B-204ENST00000619445 CCDC162PA2VCL2 907 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 KPNA5O15131 536 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 ZSCAN9O15535 394 aaPredicted RBP11.51□□□□□ -0.57
UPF3B-204ENST00000619445 APOA4P06727 396 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 CAPN1P07384 714 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 PIM1P11309 404 aaPredicted RBP11.51□□□□□ -0.57
UPF3B-204ENST00000619445 FOLR3P41439 243 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 RAB28P51157 221 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 ARSFP54793 590 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 PRAMEP78395 509 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 ACVR1Q04771 509 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 TMED2Q15363 201 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 FASTKD1Q53R41 847 aaKnown RBP11.51□□□□□ -0.57
UPF3B-204ENST00000619445 TSTD2Q5T7W7 516 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 FHL5Q5TD97 284 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 VWA5B1Q5TIE3 1220 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 YOD1Q5VVQ6 348 aaPredicted RBP11.51□□□□□ -0.57
UPF3B-204ENST00000619445 AADACL2Q6P093 401 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 TTC23LQ6PF05 361 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 UNC5DQ6UXZ4 953 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 RAB42Q8N4Z0 105 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 CLEC1AQ8NC01 280 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 OR5AR1Q8NGP9 310 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 OR4L1Q8NH43 312 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 GSDMBQ8TAX9 411 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 TM9SF4Q92544 642 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 PNPLA2Q96AD5 504 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 OR2A14Q96R47 310 aa11.51□□□□□ -0.57
UPF3B-204ENST00000619445 SMAD5Q99717 465 aaKnown RBP11.51□□□□□ -0.57
UPF3B-204ENST00000619445 NDC1Q9BTX1 674 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms