RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MAP3K3Q99759 626 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 DPYSL5Q9BPU6 564 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 RAB33BQ9H082 229 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 CCDC68Q9H2F9 335 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 SRMSQ9H3Y6 488 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 ASCL3Q9NQ33 180 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 IKZF3Q9UKT9 509 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 VWA7Q9Y334 891 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 COMMD10Q9Y6G5 202 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 AK5Q9Y6K8 562 aa13.79□□□□□ -0.2
SHKBP1-217ENST00000598558 FRYQ5TBA9 3013 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 ASPMQ8IZT6 3477 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 ARHGEF33A8MVX0 844 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 PLD2O14939 933 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 TLX3O43711 291 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 VPS26AO75436 327 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 TSPAN12O95859 305 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 ATP5DP30049 168 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 TAS2R39P59534 338 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 TRA2AQ13595 282 aaKnown RBP eCLIP13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 ZNF460Q14592 562 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 TEX35Q5T0J7 233 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 UNC5DQ6UXZ4 953 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 AMIGO1Q86WK6 493 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 CEP97Q8IW35 865 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 GSPT2Q8IYD1 628 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 BMPERQ8N8U9 685 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 DENND1AQ8TEH3 1009 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 SKA2Q8WVK7 121 aaPredicted RBP13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 FMO2Q99518 471 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 STRADBQ9C0K7 418 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 CDC42EP4Q9H3Q1 356 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 SEMA5BQ9P283 1151 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 PISDQ9UG56 409 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 POLG2Q9UHN1 485 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 ADAMTS6Q9UKP5 1117 aa13.78□□□□□ -0.2
SHKBP1-217ENST00000598558 FAM95CA0A1B0GW59 222 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 TMX2-CTNND1H3BSU7 103 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 PRAMEF10O60809 474 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 PSIP1O75475 530 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 TNFSF15O95150 251 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 CD9P21926 228 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 PRDX3P30048 256 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 PKLRP30613 574 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 GMPRP36959 345 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 SEPHS1P49903 392 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 SH3BP2P78314 561 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 CACHD1Q5VU97 1274 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 FAM20CQ8IXL6 584 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 IFT20Q8IY31 132 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 PPM1NQ8N819 430 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 GABPB2Q8TAK5 448 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 ASB11Q8WXH4 323 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 KLHL6Q8WZ60 621 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 VPS39Q96JC1 886 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 ELMO2Q96JJ3 720 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 TXLNGYQ9BZA5 131 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 FAM129AQ9BZQ8 928 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 ZMYND15Q9H091 742 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 RHOJQ9H4E5 214 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 CCDC86Q9H6F5 360 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 ANKZF1Q9H8Y5 726 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 CAB39LQ9H9S4 337 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 APMAPQ9HDC9 416 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 TAS2R13Q9NYV9 303 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 MTRF1LQ9UGC7 380 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 TRMT6Q9UJA5 497 aaKnown RBP13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 PCDHGA8Q9Y5G5 932 aa13.77□□□□□ -0.21
SHKBP1-217ENST00000598558 HMX2A2RU54 273 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 EFCAB7A8K855 629 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 CDRT15L2A8MXV6 281 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 C9orf172C9J069 976 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 GFYI3L273 518 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 HGSO14964 777 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 PRICKLE3O43900 615 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 DXOO77932 396 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 WISP3O95389 354 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 CHRM5P08912 532 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 ANKRD34CP0C6C1 535 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 MPC1LP0DKB6 136 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 PVRP15151 417 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 SAT1P21673 171 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 MAPK10P53779 464 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 FASTKQ14296 549 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 FAM45BPQ6NSW5 357 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 NEK10Q6ZWH5 1172 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 PRSS42Q7Z5A4 293 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 TRIM73Q86UV7 250 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 OOSP2Q86WS3 158 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 DCUN1D3Q8IWE4 304 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 CTAGE3PQ8IX95 158 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 KDF1Q8NAX2 398 aaPredicted RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 AGBL5Q8NDL9 886 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 UHMK1Q8TAS1 419 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 FAM45AQ8TCE6 357 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 ANKRD49Q8WVL7 239 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 USP7Q93009 1102 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 NXPE2Q96DL1 559 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 MRRFQ96E11 262 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 RNF31Q96EP0 1072 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms