RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 TMEM202A6NGA9 273 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 OR2AG2A6NM03 316 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 C5orf67F2Z3F1 127 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 H0YJX3 145 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 PDYNP01213 254 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 HRH2P25021 359 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 FXNQ16595 210 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 IMPG1Q17R60 797 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 PTCHD3Q3KNS1 767 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 TTC23LQ6PF05 361 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 ISLR2Q6UXK2 745 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 DPPA4Q7L190 304 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 TECPR1Q7Z6L1 1165 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 HERVK_113Q902F9 699 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 ELMO1Q92556 727 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 CGREF1Q99674 301 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 YIPF3Q9GZM5 350 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 PIF1Q9H611 641 aa19.8■□□□□ 0.76
CLN3-230ENST00000568076 MRPS23Q9Y3D9 190 aaKnown RBP19.8■□□□□ 0.76
CLN3-230ENST00000568076 C16orf96A6NNT2 1141 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 CFAP99D6REC4 459 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 IFRD1O00458 451 aaPredicted RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 SLC9A3R1O14745 358 aaPredicted RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 INPP4BO15327 924 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 PRAMEF4O60810 478 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 SEC22BO75396 215 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 HIST1H2AGP0C0S8 130 aaPredicted RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 HIST1H2ADP20671 130 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 PSMA4P25789 261 aaKnown RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 HTR1EP28566 365 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 OR4D2P58180 307 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 MTPNP58546 118 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 PLIN5Q00G26 463 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 PRKCQQ04759 706 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 MAD2L1Q13257 205 aaPredicted RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 SP140Q13342 867 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 PRAMEF9Q5VWM5 478 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 RALGPS2Q86X27 583 aaPredicted RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 RASGRP3Q8IV61 690 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 ST13P4Q8IZP2 240 aaPredicted RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 TCAIMQ8N3R3 496 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 PIP4K2CQ8TBX8 421 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 HIST1H2AHQ96KK5 128 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 HIST1H2AJQ99878 128 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 H2AFJQ9BTM1 129 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 AGPAT4Q9NRZ5 378 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 DUS2Q9NX74 493 aaKnown RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 ASIC5Q9NY37 505 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 NFKBIL1Q9UBC1 381 aaPredicted RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 DKK3Q9UBP4 350 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 ZNF197O14709 1029 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 SLC16A5O15375 505 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 HNRNPRO43390 633 aaKnown RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 AP2A2O94973 939 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 ADH5P11766 374 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 MMP12P39900 470 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 PWP1Q13610 501 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 GRIN2CQ14957 1233 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 CYP51A1Q16850 503 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 RBM23Q86U06 439 aaKnown RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 KRTCAP2Q8N6L1 136 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 PHOSPHO2Q8TCD6 241 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 RPF2Q9H7B2 306 aaKnown RBP19.79■□□□□ 0.76
CLN3-230ENST00000568076 C1orf109Q9NX04 203 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 ITM2BQ9Y287 266 aa19.79■□□□□ 0.76
CLN3-230ENST00000568076 FAM149AA5PLN7 773 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 SOCS2O14508 198 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 TPST1O60507 370 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 KRT6AP02538 564 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 KRT6BP04259 564 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 SRPRAP08240 638 aaKnown RBP19.78■□□□□ 0.76
CLN3-230ENST00000568076 SMIM18P0DKX4 95 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 PSMC3P17980 439 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 IL10P22301 178 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 VIPR2P41587 438 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 KRT6CP48668 564 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 HNMTP50135 292 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 VASPP50552 380 aaPredicted RBP19.78■□□□□ 0.76
CLN3-230ENST00000568076 METAP1P53582 386 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 MYBPC1Q00872 1141 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 FAM174BQ3ZCQ3 159 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 GGTA1PQ4G0N0 100 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 USP39Q53GS9 565 aaKnown RBP19.78■□□□□ 0.76
CLN3-230ENST00000568076 LIPIQ6XZB0 460 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 PRR23BQ6ZRT6 265 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 PARS2Q7L3T8 475 aaKnown RBP19.78■□□□□ 0.76
CLN3-230ENST00000568076 CELF5Q8N6W0 485 aaKnown RBP19.78■□□□□ 0.76
CLN3-230ENST00000568076 SLC13A3Q8WWT9 602 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 GTF2H4Q92759 462 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 ZSCAN5AQ9BUG6 496 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 VAPAQ9P0L0 249 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 FAM8A1Q9UBU6 413 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 SLC8A2Q9UPR5 921 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 SLC22A14Q9Y267 594 aa19.78■□□□□ 0.76
CLN3-230ENST00000568076 SLCO2B1O94956 709 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 GPIP06744 558 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 CYP2A7P20853 494 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 XPAP23025 273 aaPredicted RBP19.77■□□□□ 0.76
CLN3-230ENST00000568076 NEK2P51955 445 aa19.77■□□□□ 0.76
CLN3-230ENST00000568076 CTSCP53634 463 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms