RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 LSAMPQ13449 338 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 KIAA0040Q15053 153 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 CCSMST1Q4G0I0 132 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 PLPP4Q5VZY2 271 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 ANKRD26P1Q6NSI1 321 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 NEK5Q6P3R8 708 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 ANKRD33Q7Z3H0 272 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 GTF2H4Q92759 462 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 ZNF583Q96ND8 569 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 ZNF106Q9H2Y7 1883 aaKnown RBP12.17□□□□□ -0.46
HMGN1-220ENST00000492280 LRTM1Q9HBL6 345 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 SLC22A14Q9Y267 594 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 ITM2BQ9Y287 266 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 COMMD3-BMI1R4GMX3 469 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 CLOCKO15516 846 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 PGRP06401 933 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 RPS3P23396 243 aaKnown RBP eCLIP12.17□□□□□ -0.461e-8■□□□□ 8.7
HMGN1-220ENST00000492280 ELK4P28324 431 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 METAP1P53582 386 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 FOXM1Q08050 763 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 TEAD2Q15562 447 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 MAPKAPK3Q16644 382 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 PTCHD3Q3KNS1 767 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 MPPE1Q53F39 396 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 TMEM215Q68D42 235 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 Q6ZVL8 140 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 DDX53Q86TM3 631 aaKnown RBP12.17□□□□□ -0.46
HMGN1-220ENST00000492280 ITIH5Q86UX2 942 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 PTRH1Q86Y79 214 aaKnown RBP12.17□□□□□ -0.46
HMGN1-220ENST00000492280 ITFG1Q8TB96 612 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 SELENOMQ8WWX9 145 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 PDLIM5Q96HC4 596 aaKnown RBP12.17□□□□□ -0.46
HMGN1-220ENST00000492280 P2RY13Q9BPV8 354 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 HTATIP2Q9BUP3 242 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 LIMD1Q9UGP4 676 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 FADS3Q9Y5Q0 445 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 WNT6Q9Y6F9 365 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 CEPT1Q9Y6K0 416 aa12.17□□□□□ -0.46
HMGN1-220ENST00000492280 TRAV19A0A0A6YYK7 116 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.16□□□□□ -0.46
HMGN1-220ENST00000492280 LDLRP01130 860 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 MYCLP1P12525 358 aaPredicted RBP12.16□□□□□ -0.46
HMGN1-220ENST00000492280 BCKDHAP12694 445 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 CDH2P19022 906 aaPredicted RBP12.16□□□□□ -0.46
HMGN1-220ENST00000492280 CD9P21926 228 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 PBLDP30039 288 aaPredicted RBP12.16□□□□□ -0.46
HMGN1-220ENST00000492280 PREPP48147 710 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 EEFSECP57772 596 aaKnown RBP12.16□□□□□ -0.46
HMGN1-220ENST00000492280 SNRPD1P62314 119 aaKnown RBP12.16□□□□□ -0.46
HMGN1-220ENST00000492280 MESP2Q0VG99 397 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 PGS1Q32NB8 556 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 COQ5Q5HYK3 327 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 TPRG1Q6ZUI0 275 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 KLHL23Q8NBE8 558 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 OR2T12Q8NG77 320 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 FIBINQ8TAL6 211 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 PNPT1Q8TCS8 783 aaKnown RBP12.16□□□□□ -0.46
HMGN1-220ENST00000492280 TMBIM1Q969X1 311 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 SCRN2Q96FV2 425 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 APIPQ96GX9 242 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 APOLD1Q96LR9 279 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 DCUN1D5Q9BTE7 237 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 SMURF2Q9HAU4 748 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 NTN4Q9HB63 628 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 GPRC5BQ9NZH0 403 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 EBF1Q9UH73 591 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 CDC14AQ9UNH5 594 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 hCG_2014768A0A024R1R8 64 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 ANTXRLA6NF34 631 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 TTC34A8MYJ7 566 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 KCNH1O95259 989 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 GPIP06744 558 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 PRKACGP22612 351 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 NSG1P42857 185 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 RPS9P46781 194 aaKnown RBP12.16□□□□□ -0.46
HMGN1-220ENST00000492280 GNPDA1P46926 289 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 NR1H2P55055 460 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 ERVFC1P60507 584 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 TSTA3Q13630 321 aaPredicted RBP12.16□□□□□ -0.46
HMGN1-220ENST00000492280 CYBRD1Q53TN4 286 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 GRAMD4Q6IC98 578 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 HTR3DQ70Z44 454 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 HSD11B1LQ7Z5J1 315 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 TRIM74Q86UV6 250 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 STK32CQ86UX6 486 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 CLEC4FQ8N1N0 589 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 KREMEN2Q8NCW0 462 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 ITCHQ96J02 903 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 OR52E6Q96RD3 313 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 C9orf16Q9BUW7 83 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 RETREG1Q9H6L5 497 aa12.16□□□□□ -0.46
HMGN1-220ENST00000492280 DOCK9Q9BZ29 2069 aa12.15□□□□□ -0.46
HMGN1-220ENST00000492280 TRIM43BA6NCK2 446 aa12.15□□□□□ -0.46
HMGN1-220ENST00000492280 IFRD1O00458 451 aaPredicted RBP12.15□□□□□ -0.46
HMGN1-220ENST00000492280 GSTA4O15217 222 aa12.15□□□□□ -0.46
HMGN1-220ENST00000492280 RGS14O43566 566 aa12.15□□□□□ -0.46
HMGN1-220ENST00000492280 SOCS5O75159 536 aa12.15□□□□□ -0.46
HMGN1-220ENST00000492280 RASAL1O95294 804 aa12.15□□□□□ -0.46
HMGN1-220ENST00000492280 CXCL14O95715 111 aa12.15□□□□□ -0.46
HMGN1-220ENST00000492280 JAK1P23458 1154 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms