RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 HIST1H2AJQ99878 128 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 NUDT22Q9BRQ3 303 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 H2AFJQ9BTM1 129 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 CARD6Q9BX69 1037 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 TRIM54Q9BYV2 358 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 PDE7BQ9NP56 450 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 FBXO6Q9NRD1 293 aaPredicted RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 FAM114A2Q9NRY5 505 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ABCF3Q9NUQ8 709 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 INTS7Q9NVH2 962 aaKnown RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 SLC39A1Q9NY26 324 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 TAS2R13Q9NYV9 303 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 IL1RAPL1Q9NZN1 696 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 WHRNQ9P202 907 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ENTPD2Q9Y5L3 495 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ASXL3Q9C0F0 2248 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 LY6G6EA0A0G2JKS1 128 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 PIPSLA2A3N6 862 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 C2orf74A8MZ97 194 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 EIF3HO15372 352 aaKnown RBP eCLIP7.83□□□□□ -1.16
USP40-216ENST00000485943 ZBTB14O43829 449 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 ITGA2BP08514 1039 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 ERVK-10P10266 1014 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 POLR2CP19387 275 aaPredicted RBP7.83□□□□□ -1.16
USP40-216ENST00000485943 CCKBRP32239 447 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 STX2P32856 288 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 CCNFP41002 786 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 CAPZBP47756 277 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 LSSP48449 732 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 LIMK2P53671 638 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 B4GALNT1Q00973 533 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 SLC7A5Q01650 507 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 ACVR1Q04771 509 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 CTBP1Q13363 440 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 UAP1Q16222 522 aaPredicted RBP7.83□□□□□ -1.16
USP40-216ENST00000485943 PLEKHS1Q5SXH7 462 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 HIBCHQ6NVY1 386 aaPredicted RBP7.83□□□□□ -1.16
USP40-216ENST00000485943 WDR74Q6RFH5 385 aaPredicted RBP7.83□□□□□ -1.16
USP40-216ENST00000485943 NAPRTQ6XQN6 538 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 FAM83HQ6ZRV2 1179 aaPredicted RBP7.83□□□□□ -1.16
USP40-216ENST00000485943 FRA10AC1Q70Z53 315 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 TAOK1Q7L7X3 1001 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 AMIGO1Q86WK6 493 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 CILP2Q8IUL8 1156 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 DCUN1D3Q8IWE4 304 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 SFTPA2Q8IWL1 248 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 TBC1D21Q8IYX1 336 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 MYO1HQ8N1T3 1032 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 IL22RA1Q8N6P7 574 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 ZNF248Q8NDW4 579 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 PHC3Q8NDX5 983 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 KCNE4Q8WWG9 221 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 JPH3Q8WXH2 748 aaPredicted RBP7.83□□□□□ -1.16
USP40-216ENST00000485943 FGF11Q92914 225 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 ALKBH8Q96BT7 664 aaKnown RBP7.83□□□□□ -1.16
USP40-216ENST00000485943 CERS2Q96G23 380 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 SGSM3Q96HU1 749 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 ELMO2Q96JJ3 720 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 CNTNAP3BQ96NU0 1288 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 CNTNAP3Q9BZ76 1288 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 ASPSCR1Q9BZE9 553 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 SEMA6CQ9H3T2 930 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 KIR3DX1Q9H7L2 352 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 UCK1Q9HA47 277 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 SLC40A1Q9NP59 571 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 TIMMDC1Q9NPL8 285 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 TREX1Q9NSU2 369 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 UTP6Q9NYH9 597 aaKnown RBP7.83□□□□□ -1.16
USP40-216ENST00000485943 FBXO5Q9UKT4 447 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 TMPRSS11EQ9UL52 423 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 WDR37Q9Y2I8 494 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 U3KQA8 63 aa7.83□□□□□ -1.16
USP40-216ENST00000485943 IGLV3-16A0A075B6K0 115 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 A0A1W2PQM1 296 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 EIF4E1BA6NMX2 242 aaKnown RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 AGAP14A8MT82 685 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 IQCF5A8MTL0 148 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 NTN3O00634 580 aaPredicted RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 POLR1CO15160 346 aaPredicted RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 B4GAT1O43505 415 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 BANF1O75531 89 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 SPAG6O75602 509 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 EML2O95834 649 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 CYP2A7P20853 494 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 RPS3P23396 243 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP40-216ENST00000485943 CD1CP29017 333 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 SKIV2L2P42285 1042 aaKnown RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 SLC1A2P43004 574 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 ABCG1P45844 678 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 RPL21P46778 160 aaKnown RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 ARCN1P48444 511 aaKnown RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 ERVPABLB-1P60509 514 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 UBE2IP63279 158 aaKnown RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 ACY1Q03154 408 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 MGAT5Q09328 741 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 GLE1Q53GS7 698 aaKnown RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.82□□□□□ -1.16
USP40-216ENST00000485943 CDCP2Q5VXM1 449 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 FAM45BPQ6NSW5 357 aa7.82□□□□□ -1.16
USP40-216ENST00000485943 KIAA0408Q6ZU52 694 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms