RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 MICALCLQ6ZW33 695 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 TRIM73Q86UV7 250 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 KLHDC8BQ8IXV7 354 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 OR4L1Q8NH43 312 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 DPH2Q9BQC3 489 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-206ENST00000466591 PITPNM3Q9BZ71 974 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-206ENST00000466591 NDOR1Q9UHB4 597 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 TCFL5Q9UL49 500 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 PLAGL1Q9UM63 463 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 ICKQ9UPZ9 632 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 PRSS21Q9Y6M0 314 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 AP1M2Q9Y6Q5 423 aa16.96■□□□□ 0.31
COL7A1-206ENST00000466591 TENM4Q6N022 2769 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 A0A0U1RQJ8 604 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 VPS4BO75351 444 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 TMEM63AO94886 807 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 APOA4P06727 396 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 CHRM5P08912 532 aaPredicted RBP16.95■□□□□ 0.3
COL7A1-206ENST00000466591 UGT2B7P16662 529 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 OTX2P32243 289 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 FOXN2P32314 431 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 PTGIRP43119 386 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 MLLT10P55197 1068 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 BASP1P80723 227 aaKnown RBP16.95■□□□□ 0.3
COL7A1-206ENST00000466591 KYNUQ16719 465 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 DEFB110Q30KQ9 67 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 PLEKHS1Q5SXH7 462 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 PTRHD1Q6GMV3 140 aaKnown RBP16.95■□□□□ 0.3
COL7A1-206ENST00000466591 CDHR3Q6ZTQ4 885 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 SLC13A5Q86YT5 568 aaPredicted RBP16.95■□□□□ 0.3
COL7A1-206ENST00000466591 ADGRF3Q8IZF5 1079 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 RAB42Q8N4Z0 105 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 SLC38A9Q8NBW4 561 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 OR5K2Q8NHB8 316 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 UBE2Q2Q8WVN8 375 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 ASZ1Q8WWH4 475 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 SGSM3Q96HU1 749 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 TRIM55Q9BYV6 548 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 CATSPERZQ9NTU4 200 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 PCMTD2Q9NV79 361 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 OR6C2Q9NZP2 312 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 SLC39A10Q9ULF5 831 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 VPS4AQ9UN37 437 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 PLAAQ9Y263 795 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 BOD1L1Q8NFC6 3051 aa16.95■□□□□ 0.3
COL7A1-206ENST00000466591 A0A0J9YY10 115 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 A6NL46 340 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 K7EM74 188 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 OR1I1O60431 355 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 SESN2P58004 480 aaPredicted RBP16.94■□□□□ 0.3
COL7A1-206ENST00000466591 NCF4Q15080 339 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 C1orf189Q5VU69 101 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 TMEM139Q8IV31 216 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 RANBP9Q96S59 729 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 NRTNQ99748 197 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 NDC1Q9BTX1 674 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 INTS7Q9NVH2 962 aaKnown RBP16.94■□□□□ 0.3
COL7A1-206ENST00000466591 IFT80Q9P2H3 777 aaPredicted RBP16.94■□□□□ 0.3
COL7A1-206ENST00000466591 SLC2A6Q9UGQ3 507 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 TCAF1Q9Y4C2 921 aa16.94■□□□□ 0.3
COL7A1-206ENST00000466591 TLN1Q9Y490 2541 aaKnown RBP16.94■□□□□ 0.3
COL7A1-206ENST00000466591 MYO18BQ8IUG5 2567 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 PEX12O00623 359 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 PFDN6O15212 129 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 ZNF185O15231 689 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 NRDCO43847 1150 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 SUN1O94901 812 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 CD63P08962 238 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 MSL3P1P0C860 447 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 ETS1P14921 441 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 FOLR3P41439 243 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 TTPAP49638 278 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 DNAJC21Q5F1R6 531 aaKnown RBP16.93■□□□□ 0.3
COL7A1-206ENST00000466591 MAIP1Q8WWC4 291 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 SLC22A18Q96BI1 424 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 DHRS4Q9BTZ2 278 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 SRPK3Q9UPE1 567 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 ZNF451Q9Y4E5 1061 aa16.93■□□□□ 0.3
COL7A1-206ENST00000466591 FLNBO75369 2602 aaKnown RBP16.92■□□□□ 0.3
COL7A1-206ENST00000466591 AP3B1O00203 1094 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 ZSCAN9O15535 394 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-206ENST00000466591 NDUFS3O75489 264 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 RORAP35398 523 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 UBAP2LQ14157 1087 aaKnown RBP16.92■□□□□ 0.3
COL7A1-206ENST00000466591 KIR2DS3Q14952 304 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 OASLQ15646 514 aaKnown RBP16.92■□□□□ 0.3
COL7A1-206ENST00000466591 MED25Q71SY5 747 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 PRUNE1Q86TP1 453 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 TAX1BP1Q86VP1 789 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 TMEM102Q8N9M5 508 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-206ENST00000466591 OR13J1Q8NGT2 312 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 PANX3Q96QZ0 392 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 SLAMF7Q9NQ25 335 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 LZTFL1Q9NQ48 299 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 GPR83Q9NYM4 423 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 GNPTGQ9UJJ9 305 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 RIMKLBQ9ULI2 386 aa16.92■□□□□ 0.3
COL7A1-206ENST00000466591 PTRH2Q9Y3E5 179 aaKnown RBP16.92■□□□□ 0.3
COL7A1-206ENST00000466591 PCDHGA9Q9Y5G4 932 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms