RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TBC1D29Q9UFV1 150 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 TEX264Q9Y6I9 313 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 HIVEP1P15822 2718 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 TRBV23OR9-2A0A075B6M9 112 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 A6NCN8 305 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 BHMG1C9JSJ3 638 aaPredicted RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 E7ESA3 106 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 CD3EAPO15446 510 aaKnown RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 HNRNPRO43390 633 aaKnown RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 SGTAO43765 313 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 TTC4O95801 387 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 EML2O95834 649 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 POLBP06746 335 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 PRF1P14222 555 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 ZNF7P17097 686 aaPredicted RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 PPARGP37231 505 aaPredicted RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 ELK3P41970 407 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 ARCN1P48444 511 aaKnown RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 PRLHRP49683 370 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 HHEXQ03014 270 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 INPP5JQ15735 1006 aaPredicted RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 INSCQ1MX18 579 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 PLA2G4EQ3MJ16 856 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 BCL7AQ4VC05 210 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 TMEM220Q6QAJ8 160 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 ZDHHC24Q6UX98 284 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 DET1Q7L5Y6 550 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 C11orf96Q7Z7L8 435 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 SLC9B2Q86UD5 537 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 FAM129CQ86XR2 697 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 BMPERQ8N8U9 685 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 OR10G6Q8NH81 332 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 MARVELD3Q96A59 401 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 AHCYL2Q96HN2 611 aaKnown RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 WDR83Q9BRX9 315 aaKnown RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 ZPBPQ9BS86 351 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 MARCH4Q9P2E8 410 aaPredicted RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 CHMP2BQ9UQN3 213 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 POLHQ9Y253 713 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 KCNK6Q9Y257 313 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 TMEM184BQ9Y519 407 aaPredicted RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 MRPS18BQ9Y676 258 aaKnown RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 DNMT3AQ9Y6K1 912 aaPredicted RBP11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 FAM169AQ9Y6X4 670 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 AKAP9Q99996 3911 aa11.62□□□□□ -0.55
SQSTM1-206ENST00000466342 ESYT3A0FGR9 886 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 QSOX1O00391 747 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 EIF3HO15372 352 aaKnown RBP eCLIP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 SORBS2O94875 1100 aaKnown RBP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 AP2A2O94973 939 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 THRAP10827 490 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 VCLP18206 1134 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 XRCC1P18887 633 aaPredicted RBP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 OGNP20774 298 aaKnown RBP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 NSG1P42857 185 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 TTPAP49638 278 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 EPHA4P54764 986 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 PLTPP55058 493 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 MC2RQ01718 297 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 GUCY2DQ02846 1103 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 DMPKQ09013 629 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 PDIA2Q13087 525 aaKnown RBP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 ERV3-1Q14264 604 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 CRYMQ14894 314 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 TRADDQ15628 312 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 LONRF1Q17RB8 773 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 NADK2Q4G0N4 442 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 SPANXN3Q5MJ09 141 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 HP1BP3Q5SSJ5 553 aaPredicted RBP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 NKAIN2Q5VXU1 208 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 MRNIPQ6NTE8 343 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 WDR74Q6RFH5 385 aaPredicted RBP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 CEACAM20Q6UY09 585 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 CENPUQ71F23 418 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 IGDCC3Q8IVU1 814 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 OTUD6BQ8N6M0 293 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 GPR150Q8NGU9 434 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 FBXO25Q8TCJ0 367 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 NAT14Q8WUY8 206 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 LINC00615Q96LM1 132 aaPredicted RBP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 C5orf34Q96MH7 638 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 SLC29A3Q9BZD2 475 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 PHACTR1Q9C0D0 580 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 EPB41L1Q9H4G0 881 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 FAM114A2Q9NRY5 505 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 KLC4Q9NSK0 619 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 SLC23A2Q9UGH3 650 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 ZC3H7BQ9UGR2 993 aaKnown RBP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 DMGDHQ9UI17 866 aaKnown RBP11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 CSMD2Q7Z408 3487 aa11.61□□□□□ -0.55
SQSTM1-206ENST00000466342 KLHL33A6NCF5 533 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 GOLGA8KD6RF30 607 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 GOLGA8TH3BQL2 631 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 SNX2O60749 519 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 KCNJ13O60928 360 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 POP7O75817 140 aaKnown RBP11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 STK17BO94768 372 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 FURINP09958 794 aa11.6□□□□□ -0.55
SQSTM1-206ENST00000466342 F8A1P23610 371 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms