RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 SPPL2CQ8IUH8 684 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 ZDHHC18Q9NUE0 388 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 OXSMQ9NWU1 459 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 GEMIN8Q9NWZ8 242 aaKnown RBP16.95■□□□□ 0.3
PHRF1-202ENST00000413872 PDP1Q9P0J1 537 aaPredicted RBP16.95■□□□□ 0.3
PHRF1-202ENST00000413872 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.95■□□□□ 0.3
PHRF1-202ENST00000413872 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.95■□□□□ 0.3
PHRF1-202ENST00000413872 OR51F1A6NGY5 319 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 PRR23BQ6ZRT6 265 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.95■□□□□ 0.3
PHRF1-202ENST00000413872 PEX13Q92968 403 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 SLC2A13Q96QE2 648 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 SPHK2Q9NRA0 654 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 RIIAD1A6NNX1 92 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 CHST10O43529 356 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 ZMIZ2Q8NF64 920 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 SNRNP27Q8WVK2 155 aaKnown RBP16.95■□□□□ 0.3
PHRF1-202ENST00000413872 ZHX1-C8orf76Q96EF9 292 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 P2RY13Q9BPV8 354 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 REXO4Q9GZR2 422 aaKnown RBP16.95■□□□□ 0.3
PHRF1-202ENST00000413872 SMURF2Q9HAU4 748 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 S100A14Q9HCY8 104 aa16.95■□□□□ 0.3
PHRF1-202ENST00000413872 B4DGG1 531 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 OAS1P00973 400 aaKnown RBP16.94■□□□□ 0.3
PHRF1-202ENST00000413872 IGFBP5P24593 272 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 CRISP3P54108 245 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 SEMG2Q02383 582 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 TFGQ92734 400 aaPredicted RBP16.94■□□□□ 0.3
PHRF1-202ENST00000413872 WDR6Q9NNW5 1121 aaKnown RBP16.94■□□□□ 0.3
PHRF1-202ENST00000413872 MAGEB3O15480 346 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 TLX3O43711 291 aaPredicted RBP16.94■□□□□ 0.3
PHRF1-202ENST00000413872 MMP20O60882 483 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 CCKBRP32239 447 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 CAPGP40121 348 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 IFI44LQ53G44 452 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 IKBIPQ70UQ0 350 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 SLC9B2Q86UD5 537 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 HM13Q8TCT9 377 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 DDX1Q92499 740 aaKnown RBP16.94■□□□□ 0.3
PHRF1-202ENST00000413872 CFL2Q9Y281 166 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 KDM3BQ7LBC6 1761 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 SCN11AQ9UI33 1791 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 TIPRLO75663 272 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 MLLT3P42568 568 aaPredicted RBP16.94■□□□□ 0.3
PHRF1-202ENST00000413872 SLC18A1P54219 525 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 FAM174BQ3ZCQ3 159 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 VWA5B1Q5TIE3 1220 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 HDDC2Q7Z4H3 204 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 MTERF1Q99551 399 aaKnown RBP16.94■□□□□ 0.3
PHRF1-202ENST00000413872 EPB41L1Q9H4G0 881 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 HCRTO43612 131 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 ECI2O75521 394 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 GSRP00390 522 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 AMZ1Q400G9 498 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 SVOPLQ8N434 492 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 ARL10Q8N8L6 244 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 GPR62Q9BZJ7 368 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 CMTM6Q9NX76 183 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 FADS3Q9Y5Q0 445 aa16.94■□□□□ 0.3
PHRF1-202ENST00000413872 NBNO60934 754 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 NRG3P56975 720 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 BNIP1Q12981 228 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 FRG2Q64ET8 278 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 FAM91A1Q658Y4 838 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 B3GNT6Q6ZMB0 384 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 ZC3HC1Q86WB0 502 aaKnown RBP16.93■□□□□ 0.3
PHRF1-202ENST00000413872 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.93■□□□□ 0.32e-7■■■■■ 27.8
PHRF1-202ENST00000413872 FRG2BQ96QU4 278 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 KIFC1Q9BW19 673 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 ERVK-11Q9UQG0 969 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 TMED5Q9Y3A6 229 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 A0A1W2PRB8 838 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 TCF4P15884 667 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 VEGFBP49765 207 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 STC1P52823 247 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 FOLH1Q04609 750 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 RALGDSQ12967 914 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 KLHL24Q6TFL4 600 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 KRT74Q7RTS7 529 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 UMODL1-AS1Q8N2C9 162 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 FBXO15Q8NCQ5 510 aaPredicted RBP16.93■□□□□ 0.3
PHRF1-202ENST00000413872 BORCS6Q96GS4 357 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 CLPTM1LQ96KA5 538 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 GPR22Q99680 433 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 KLHL25Q9H0H3 589 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 MAN2B1O00754 1011 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 SCAMP1O15126 338 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 SNAPC1Q16533 368 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 QPCTQ16769 361 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 ZNF311Q5JNZ3 666 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 CPNE8Q86YQ8 564 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 HPS6Q86YV9 775 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 DCUN1D3Q8IWE4 304 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 BADQ92934 168 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 ART5Q96L15 291 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 CAMK1GQ96NX5 476 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 TMEM209Q96SK2 561 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 CYP2S1Q96SQ9 504 aa16.93■□□□□ 0.3
PHRF1-202ENST00000413872 CLEC4MQ9H2X3 399 aaPredicted RBP16.93■□□□□ 0.3
PHRF1-202ENST00000413872 ELL3Q9HB65 397 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms