RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SLC13A4Q9UKG4 626 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 BAG5Q9UL15 447 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 PGM3O95394 542 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 CLPTM1O96005 669 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 GBAP04062 536 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 ZNF30P17039 623 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 BMP8BP34820 402 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 CCR3P51677 355 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 COPAP53621 1224 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 LIMK2P53671 638 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 PUS10Q3MIT2 529 aaKnown RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 MLIPQ5VWP3 458 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 SATL1Q86VE3 508 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 GPR65Q8IYL9 337 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 SCML4Q8N228 414 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 RNF148Q8N7C7 305 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 KCT2Q8NC54 265 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 C7orf26Q96N11 449 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 TRIT1Q9H3H1 467 aaKnown RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 NOL11Q9H8H0 719 aaKnown RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 ZNF395Q9H8N7 513 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 MAGEE1Q9HCI5 957 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 TAC3Q9UHF0 121 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 SLC22A14Q9Y267 594 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 HS3ST2Q9Y278 367 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 DTNAQ9Y4J8 743 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 MYOCOSA0A1B0GUC4 107 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 TPD52P55327 224 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PHEXP78562 749 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 SLC25A3Q00325 362 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 CCINQ13939 588 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 TEDDM1Q5T9Z0 273 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 TMEM92Q6UXU6 159 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 KYAT3Q6YP21 454 aaKnown RBP10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PDSS2Q86YH6 399 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 RERGQ96A58 199 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-205ENST00000392004 RAD51AP1Q96B01 352 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 ZFRQ96KR1 1074 aaKnown RBP10.08□□□□□ -0.8
COL6A3-205ENST00000392004 HRASLS2Q9NWW9 162 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 CDYLQ9Y232 598 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 TEX264Q9Y6I9 313 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 FAM92AA1XBS5 289 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 ANGPT2O15123 496 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 KPNA5O15131 536 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 STK16O75716 305 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 SERPINA6P08185 405 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 CNTFP26441 200 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 TPP2P29144 1249 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-205ENST00000392004 EPHA3P29320 983 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 MAPK10P53779 464 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 LIMS2Q7Z4I7 341 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 C11orf74Q86VG3 221 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 CILP2Q8IUL8 1156 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 OR56A4Q8NGH8 313 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 DOK4Q8TEW6 326 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 TGM7Q96PF1 710 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 OR2M4Q96R27 311 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 RBCK1Q9BYM8 510 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 CEP44Q9C0F1 390 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 SLC2A4RGQ9NR83 387 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PACSIN3Q9UKS6 424 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PLEKHM1Q9Y4G2 1056 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PCDHB1Q9Y5F3 818 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 COLEC10Q9Y6Z7 277 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 COL6A6A6NMZ7 2263 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 KLF11O14901 512 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 HOXC11O43248 304 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-205ENST00000392004 EPOP01588 193 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 HNRNPCP07910 306 aaKnown RBP eCLIP10.08□□□□□ -0.8
COL6A3-205ENST00000392004 IMPDH2P12268 514 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 BMP1P13497 986 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PFKLP17858 780 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 RPL5P46777 297 aaKnown RBP10.08□□□□□ -0.8
COL6A3-205ENST00000392004 NEK2P51955 445 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PPP2CBP62714 309 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PPP2CAP67775 309 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 IRF4Q15306 451 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 DEFB110Q30KQ9 67 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 GPR33Q49SQ1 333 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 LRRC8EQ6NSJ5 796 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 ADGRG6Q86SQ4 1221 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 LILRA3Q8N6C8 439 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PLA2G15Q8NCC3 412 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 OR2T34Q8NGX1 318 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 FBXO27Q8NI29 283 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 TSSK3Q96PN8 268 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 TMEM168Q9H0V1 697 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 IPPKQ9H8X2 491 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 PTTG2Q9NZH5 202 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 CCDC167Q9P0B6 97 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 GPR34Q9UPC5 381 aa10.08□□□□□ -0.8
COL6A3-205ENST00000392004 ZNF860A6NHJ4 632 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 QSOX1O00391 747 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 ULK1O75385 1050 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 PDE5AO76074 875 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 DHRS4L1P0CG22 281 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 ITGB7P26010 798 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 STC1P52823 247 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 SLC18A2Q05940 514 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 SEMA3BQ13214 749 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms