RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 UMPSP11172 480 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 MAPKAPK3Q16644 382 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 SERPINA13PQ6UXR4 307 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 UBE2R2Q712K3 238 aaPredicted RBP18.93■□□□□ 0.62
COL9A3-201ENST00000343916 TRIM46Q7Z4K8 759 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 OFCC1Q8IZS5 231 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 FAM86B1Q8N7N1 296 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 KREMEN2Q8NCW0 462 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 THUMPD3Q9BV44 507 aaKnown RBP18.93■□□□□ 0.62
COL9A3-201ENST00000343916 ACPTQ9BZG2 426 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 FAM8A1Q9UBU6 413 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 MAGEL2Q9UJ55 1249 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 GRXCR2A6NFK2 248 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 SLC28A1O00337 649 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 CXCL14O95715 111 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 LDLRP01130 860 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 PGRP06401 933 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 CLTBP09497 229 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 SLC36A3Q495N2 470 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 GTDC1Q4AE62 458 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 OTUD3Q5T2D3 398 aaPredicted RBP18.92■□□□□ 0.62
COL9A3-201ENST00000343916 TMEM214Q6NUQ4 689 aaKnown RBP18.92■□□□□ 0.62
COL9A3-201ENST00000343916 FIG4Q92562 907 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 SCAMP4Q969E2 229 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 MCCC1Q96RQ3 725 aaPredicted RBP18.92■□□□□ 0.62
COL9A3-201ENST00000343916 ZBTB18Q99592 522 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 ASAH2Q9NR71 780 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 SLC25A37Q9NYZ2 338 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.92■□□□□ 0.62
COL9A3-201ENST00000343916 TRPS1Q9UHF7 1281 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 DMTF1Q9Y222 760 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 KANSL1LA0AUZ9 987 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 CLDN9O95484 217 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 PDYNP01213 254 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 CARD16Q5EG05 197 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 LILRA6Q6PI73 481 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 USP7Q93009 1102 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 TBCDQ9BTW9 1192 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 CLK4Q9HAZ1 481 aaKnown RBP18.92■□□□□ 0.62
COL9A3-201ENST00000343916 SLC6A13Q9NSD5 602 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 GALNT8Q9NY28 637 aa18.92■□□□□ 0.62
COL9A3-201ENST00000343916 CHD7Q9P2D1 2997 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 KIAA1671Q9BY89 1806 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 SNAP29O95721 258 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 AKT1P31749 480 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 PPM1AP35813 382 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 SPINT3P49223 89 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 CACHD1Q5VU97 1274 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 TTC33Q6PID6 262 aaPredicted RBP18.91■□□□□ 0.62
COL9A3-201ENST00000343916 ELMOD1Q8N336 334 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 ITFG1Q8TB96 612 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 HAUS8Q9BT25 410 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 BBS2Q9BXC9 721 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 LINC00597Q9H2U6 94 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 SLC32A1Q9H598 525 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 CARS2Q9HA77 564 aaKnown RBP18.91■□□□□ 0.62
COL9A3-201ENST00000343916 SLC25A13Q9UJS0 675 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 DLGAP4Q9Y2H0 992 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 PPIL1Q9Y3C6 166 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 MAGED1Q9Y5V3 778 aaPredicted RBP18.91■□□□□ 0.62
COL9A3-201ENST00000343916 LTBP2Q14767 1821 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 C5orf42Q9H799 3197 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 AREL1O15033 823 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 GRM6O15303 877 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 B3GALT4O96024 378 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 OR56A5P0C7T3 313 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 GGT1P19440 569 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 MYF6P23409 242 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 AOAHP28039 575 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 MSRB3Q8IXL7 192 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 SLC22A15Q8IZD6 547 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 BEND7Q8N7W2 519 aaPredicted RBP18.91■□□□□ 0.62
COL9A3-201ENST00000343916 KLHL23Q8NBE8 558 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 OR2T12Q8NG77 320 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 C1orf109Q9NX04 203 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 MAFFQ9ULX9 164 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 CEPT1Q9Y6K0 416 aa18.91■□□□□ 0.62
COL9A3-201ENST00000343916 IFRD1O00458 451 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 RFPL2O75678 378 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 POP4O95707 220 aaKnown RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 CBSLP0DN79 551 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 BCKDHAP12694 445 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 CDH1P12830 882 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 CBSP35520 551 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 RPS9P46781 194 aaKnown RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 MAD2L1Q13257 205 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 TMEM259Q4ZIN3 620 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 USP39Q53GS9 565 aaKnown RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 RIMKLAQ8IXN7 391 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 PHACTR4Q8IZ21 702 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 OR8J3Q8NGG0 315 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 BPIFB1Q8TDL5 484 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 SELENOMQ8WWX9 145 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 SORCS1Q8WY21 1168 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 PHF12Q96QT6 1004 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 OR52E6Q96RD3 313 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 CLMPQ9H6B4 373 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 NTN4Q9HB63 628 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 SMPD3Q9NY59 655 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 IGLV3-16A0A075B6K0 115 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms