RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 KCTD5Q9NXV2 234 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 SCN8AQ9UQD0 1980 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 TCRBV5S2A0A599 114 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 DLGAP1O14490 977 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ANKRD28O15084 1053 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 VILLO15195 856 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 AP1G1O43747 822 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 LILRB3O75022 631 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 CAPNS1P04632 268 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 HALP42357 657 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 PRMT2P55345 433 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 RPL26P61254 145 aaKnown RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 TTC33Q6PID6 262 aaPredicted RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ENPP6Q6UWR7 440 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 HSD11B1LQ7Z5J1 315 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ITFG1Q8TB96 612 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 TOX2Q96NM4 488 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ELOVL6Q9H5J4 265 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ZNF696Q9H7X3 374 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 LIMD1Q9UGP4 676 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ITM2BQ9Y287 266 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 MYRFQ9Y2G1 1151 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 A0A1B0GVG6 124 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 LEFTY1O75610 366 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 KCNH1O95259 989 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 H6PDO95479 791 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 LDLRP01130 860 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 C1QCP02747 245 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ADH1AP07327 375 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ENO2P09104 434 aaPredicted RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 HIST1H2AGP0C0S8 130 aaPredicted RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 OR56A5P0C7T3 313 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 PIM1P11309 404 aaPredicted RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 HIST1H2ADP20671 130 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 CCT8P50990 548 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 GPR33Q49SQ1 333 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 TMEM215Q68D42 235 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 CWF19L1Q69YN2 538 aaKnown RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 FAM217AQ8IXS0 508 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 HS3ST5Q8IZT8 346 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 CPXM2Q8N436 756 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 HIST1H2AHQ96KK5 128 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 APOLD1Q96LR9 279 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ZSWIM3Q96MP5 696 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 PHF12Q96QT6 1004 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 HIST1H2AJQ99878 128 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 P2RY13Q9BPV8 354 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 H2AFJQ9BTM1 129 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ACPTQ9BZG2 426 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 PARVBQ9HBI1 364 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 LTB4R2Q9NPC1 389 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ZDHHC4Q9NPG8 344 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 HPS4Q9NQG7 708 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 CNOT11Q9UKZ1 510 aaKnown RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 TMCO1Q9UM00 188 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 CCL27Q9Y4X3 112 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 MYO9BQ13459 2157 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 PER2O15055 1255 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 GRM6O15303 877 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 CLDN9O95484 217 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 POP4O95707 220 aaKnown RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 PGRP06401 933 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 RFC2P35250 354 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 PREPP48147 710 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 SPINT3P49223 89 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 EEFSECP57772 596 aaKnown RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 FOXM1Q08050 763 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 MERTKQ12866 999 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 COQ5Q5HYK3 327 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 CACHD1Q5VU97 1274 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 ANKRD34AQ69YU3 496 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 OR2T12Q8NG77 320 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 TFAP2CQ92754 450 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 DUS3LQ96G46 650 aaKnown RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 CARS2Q9HA77 564 aaKnown RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 CXXC1Q9P0U4 656 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 HEMK1Q9Y5R4 338 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 CLOCKO15516 846 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 GMNNO75496 209 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 BCKDHAP12694 445 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 EPORP19235 508 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 TXNL4AP83876 142 aaKnown RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 ROR2Q01974 943 aaKnown RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 PWP1Q13610 501 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 NEK5Q6P3R8 708 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 C10orf111Q8N326 155 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 DGCR14Q96DF8 476 aaKnown RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 MED8Q96G25 268 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 C9orf16Q9BUW7 83 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 DMDP11532 3685 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 MYCLP1P12525 358 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 XPAP23025 273 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 PPM1AP35813 382 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 IRX1P78414 480 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 GRIK2Q13002 908 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 AASDHQ4L235 1098 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-201ENST00000341247 GDPD4Q6W3E5 623 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 CCDC149Q6ZUS6 474 aa10.1□□□□□ -0.79
LIMA1-201ENST00000341247 RBM23Q86U06 439 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms