RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 CCR10P46092 362 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 SERPINB4P48594 390 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 PPM1FP49593 454 aaPredicted RBP15□□□□□ -0.01
PDLIM5-202ENST00000318007 RPA4Q13156 261 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 SLC23A3Q6PIS1 610 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 CCDC91Q7Z6B0 441 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 GKN2Q86XP6 184 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 TRIM48Q8IWZ4 208 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 PTGR2Q8N8N7 351 aaPredicted RBP15□□□□□ -0.01
PDLIM5-202ENST00000318007 CEP76Q8TAP6 659 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 SLC37A2Q8TED4 501 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 DENND1AQ8TEH3 1009 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 CXorf40BQ96DE9 158 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 MED8Q96G25 268 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 HIST1H2AHQ96KK5 128 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 HIST1H2AJQ99878 128 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 H2AFJQ9BTM1 129 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 SHCBP1LQ9BZQ2 653 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 PARVBQ9HBI1 364 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 KLHL42Q9P2K6 505 aa15□□□□□ -0.01
PDLIM5-202ENST00000318007 A8MT66 165 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 KHNYNO15037 678 aaKnown RBP14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 SLC16A8O95907 504 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 CATP04040 527 aaKnown RBP14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 C8GP07360 202 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 ANXA6P08133 673 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 BGNP21810 368 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 PLOD1Q02809 727 aaPredicted RBP14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 CAPRIN2Q6IMN6 1127 aaKnown RBP14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 FBXO39Q8N4B4 442 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 MINDY1Q8N5J2 469 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 CCNYL1Q8N7R7 359 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 PKP4Q99569 1192 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 NCKIPSDQ9NZQ3 722 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 OARD1Q9Y530 152 aa14.99□□□□□ -0.01
PDLIM5-202ENST00000318007 A6NCN8 305 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 TARM1B6A8C7 271 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 GFYI3L273 518 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 SMIM24O75264 130 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 MTHFD1P11586 935 aaKnown RBP14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 EPHA8P29322 1005 aaPredicted RBP14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 SLC19A1P41440 591 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 HSPA7P48741 367 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 NUBP1P53384 320 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 BIRC2Q13490 618 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 PLCL1Q15111 1095 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 SUSD1Q6UWL2 747 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 NUDCD3Q8IVD9 361 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 SUMF1Q8NBK3 374 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 OR5K2Q8NHB8 316 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 PPP1R14CQ8TAE6 165 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 RHEBL1Q8TAI7 183 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 MCOLN3Q8TDD5 553 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 TMEM237Q96Q45 408 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 SLC12A9Q9BXP2 914 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 TRIT1Q9H3H1 467 aaKnown RBP14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 FAM53CQ9NYF3 392 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 WWOXQ9NZC7 414 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 RALGAPA1Q6GYQ0 2036 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 S100BP04271 92 aaPredicted RBP14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 SF3A3Q12874 501 aaKnown RBP eCLIP14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 FASTKQ14296 549 aaKnown RBP14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 CHI3L2Q15782 390 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 LAIR1Q6GTX8 287 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 IYDQ6PHW0 289 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 ABRAXAS1Q6UWZ7 409 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 ZYG11AQ6WRX3 759 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 NEK10Q6ZWH5 1172 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 SYTL1Q8IYJ3 562 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 DCBLD1Q8N8Z6 715 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 AGR3Q8TD06 166 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 TRIM54Q9BYV2 358 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 ZNF395Q9H8N7 513 aaPredicted RBP14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 ERVMER34-1Q9H9K5 563 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 RAPGEFL1Q9UHV5 662 aa14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 ZFHX2Q9C0A1 2572 aaPredicted RBP14.98□□□□□ -0.01
PDLIM5-202ENST00000318007 A0A1B0GTQ1 180 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 KLHL33A6NCF5 533 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 SYCE1LA8MT33 242 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 LMO7DNF2Z398 122 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 EIF3FO00303 357 aaPredicted RBP14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 CASC3O15234 703 aaKnown RBP14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 CCNT2O60583 730 aaKnown RBP14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 VIPP01282 170 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 TPBGLP0DKB5 382 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 TAC1P20366 129 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 EEF1DP29692 281 aaKnown RBP14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 HOXD12P35452 270 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 ARL1P40616 181 aaPredicted RBP14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 NAGLUP54802 743 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 CDH13P55290 713 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 HHEXQ03014 270 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 ZXDCQ2QGD7 858 aaPredicted RBP14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 CES4AQ5XG92 561 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 TTC23LQ6PF05 361 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 DCUN1D3Q8IWE4 304 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 KYQ8NBH2 561 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 OR52E1Q8NGJ3 308 aa14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 NSUN5Q96P11 429 aaKnown RBP14.97□□□□□ -0.01
PDLIM5-202ENST00000318007 PHOX2BQ99453 314 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms