RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	RPL14	P50914	215 aa	Known RBP	11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	CLCNKA	P51800	687 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	SRP54	P61011	504 aa	Known RBP	11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	RPL6	Q02878	288 aa	Known RBP	11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	ATG14	Q6ZNE5	492 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	PDZD3	Q86UT5	571 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	WDR75	Q8IWA0	830 aa	Known RBP	11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	ANKS4B	Q8N8V4	417 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	MAGEC3	Q8TD91	643 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	ATL1	Q8WXF7	558 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	FBXL8	Q96CD0	374 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	KLHDC7B	Q96G42	594 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	OR2M4	Q96R27	311 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	SIKE1	Q9BRV8	207 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	CD244	Q9BZW8	370 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	ZDHHC5	Q9C0B5	715 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	CARS2	Q9HA77	564 aa	Known RBP	11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	MRPL40	Q9NQ50	206 aa	Known RBP	11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	PNPO	Q9NVS9	261 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	KL	Q9UEF7	1012 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	VTI1B	Q9UEU0	232 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	PCTP	Q9UKL6	214 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	GON4L	Q3T8J9	2241 aa		11.49	□□□□□ -0.57
CLN6-223	ENST00000637823	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	ARHGEF33	A8MVX0	844 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	IFRD1	O00458	451 aa	Predicted RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	C1orf105	O95561	183 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	MLYCD	O95822	493 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	TNF	P01375	233 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	RPN2	P04844	631 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	SLC35G4	P0C7Q5	338 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	KIT	P10721	976 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	CCR10	P46092	362 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	CLC	Q05315	142 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	LRP8	Q14114	963 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	TPRG1L	Q5T0D9	272 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	CAPRIN2	Q6IMN6	1127 aa	Known RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	RPS27L	Q71UM5	84 aa	Known RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	IQCH	Q86VS3	1027 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	WDR5B	Q86VZ2	330 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	AFAP1L2	Q8N4X5	818 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	ZNF781	Q8N8C0	355 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	MFSD2A	Q8NA29	543 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	OR13H1	Q8NG92	308 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	RFWD2	Q8NHY2	731 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	TSACC	Q96A04	125 aa	Predicted RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	THOC1	Q96FV9	657 aa	Known RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	FAR2	Q96K12	515 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	HGH1	Q9BTY7	390 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	WWP1	Q9H0M0	922 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	DUSP15	Q9H1R2	295 aa	Predicted RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	KCNK13	Q9HB14	408 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	PRMT8	Q9NR22	394 aa	Predicted RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	AASDHPPT	Q9NRN7	309 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	GPR27	Q9NS67	375 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	KCNK4	Q9NYG8	393 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	WWOX	Q9NZC7	414 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	EIF2B4	Q9UI10	523 aa	Known RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	ZDHHC2	Q9UIJ5	367 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	STK38L	Q9Y2H1	464 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	USH1C	Q9Y6N9	552 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	DGKB	Q9Y6T7	804 aa		11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	TP53BP1	Q12888	1972 aa	Predicted RBP	11.48	□□□□□ -0.57
CLN6-223	ENST00000637823	SPAG17	Q6Q759	2223 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	SPTY2D1-AS1	A0A0U1RR47	76 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	MEI4	A8MW99	385 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823		K7EPI3	171 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	E2F3	O00716	465 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	LAMTOR5	O43504	91 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	STK16	O75716	305 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	FGF4	P08620	206 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	THEGL	P0DJG4	465 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	ALOX15	P16050	662 aa	Predicted RBP	11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	MPST	P25325	297 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	CD38	P28907	300 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	PIK3CG	P48736	1102 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	HSPA7	P48741	367 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	ARFIP2	P53365	341 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	CDH13	P55290	713 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	PKNOX1	P55347	436 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	RACK1	P63244	317 aa	Known RBP	11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	DMWD	Q09019	674 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	SF3A3	Q12874	501 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	LCP2	Q13094	533 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	GTF2H2	Q13888	395 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	ALG11	Q2TAA5	492 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	C18orf21	Q32NC0	220 aa	Predicted RBP	11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	GTF2H2C	Q6P1K8	395 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	MBOAT1	Q6ZNC8	495 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	RD3	Q7Z3Z2	195 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	CUZD1	Q86UP6	607 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	DEFB119	Q8N690	84 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	OR9A1P	Q8NGU1	263 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	TRPC4AP	Q8TEL6	797 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	C10orf82	Q8WW14	230 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	TFG	Q92734	400 aa	Predicted RBP	11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	ESAM	Q96AP7	390 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	NSUN5	Q96P11	429 aa	Known RBP	11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	PKP4	Q99569	1192 aa		11.47	□□□□□ -0.57
CLN6-223	ENST00000637823	TMEM79	Q9BSE2	394 aa		11.47	□□□□□ -0.57

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