RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 GEMP55040 296 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 FOXL2P58012 376 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 SARM1Q6SZW1 724 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 TRIM73Q86UV7 250 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 HOOK3Q86VS8 718 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 ADGRF3Q8IZF5 1079 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 NXPE1Q8N323 547 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 OR13C4Q8NGS5 318 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 INPP5DQ92835 1189 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 QKIQ96PU8 341 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLN3-262ENST00000637699 DNAJC7Q99615 494 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 COPS8Q99627 209 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 CHP1Q99653 195 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 ANP32EQ9BTT0 268 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 HGH1Q9BTY7 390 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 SPRTNQ9H040 489 aaPredicted RBP18.77■□□□□ 0.6
CLN3-262ENST00000637699 OR52A5Q9H2C5 316 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 ZNF552Q9H707 407 aaPredicted RBP18.77■□□□□ 0.6
CLN3-262ENST00000637699 COG4Q9H9E3 785 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 FAM60AQ9NP50 221 aa18.77■□□□□ 0.6
CLN3-262ENST00000637699 ZNHIT6Q9NWK9 470 aaKnown RBP18.77■□□□□ 0.6
CLN3-262ENST00000637699 MDC1Q14676 2089 aaKnown RBP18.77■□□□□ 0.59
CLN3-262ENST00000637699 TEP1Q99973 2627 aaKnown RBP18.76■□□□□ 0.59
CLN3-262ENST00000637699 C17orf113A0A1B0GUU1 675 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 AGAP14A8MT82 685 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 CFAP99D6REC4 459 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 OR2B3O76000 313 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 SLC9A5Q14940 896 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 DEFB110Q30KQ9 67 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 IGFL3Q6UXB1 125 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 RANBP10Q6VN20 620 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 ZADH2Q8N4Q0 377 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 TTC13Q8NBP0 860 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 ULK4Q96C45 1275 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 C17orf62Q9BQA9 187 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 GORASP1Q9BQQ3 440 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 MVB12BQ9H7P6 319 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 ZBTB20Q9HC78 741 aaPredicted RBP18.76■□□□□ 0.59
CLN3-262ENST00000637699 P4HTMQ9NXG6 502 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 IFT80Q9P2H3 777 aaPredicted RBP18.76■□□□□ 0.59
CLN3-262ENST00000637699 NTNG1Q9Y2I2 539 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 FER1L5A0AVI2 2057 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 ABCA12Q86UK0 2595 aa18.76■□□□□ 0.59
CLN3-262ENST00000637699 HACD1B0YJ81 288 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 CCL22O00626 93 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 HCRTR1O43613 425 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 ANXA9O76027 345 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 IGHEP01854 428 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 ITGALP20701 1170 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 RBL1P28749 1068 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 SKOR2Q2VWA4 1001 aaPredicted RBP18.75■□□□□ 0.59
CLN3-262ENST00000637699 TFDP3Q5H9I0 405 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 CRB2Q5IJ48 1285 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 SPESP1Q6UW49 350 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 MICALCLQ6ZW33 695 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 TMEM151BQ8IW70 566 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 C19orf47Q8N9M1 422 aaKnown RBP18.75■□□□□ 0.59
CLN3-262ENST00000637699 TM9SF4Q92544 642 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 TFGQ92734 400 aaPredicted RBP18.75■□□□□ 0.59
CLN3-262ENST00000637699 CCDC42Q96M95 316 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 GBA3Q9H227 469 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 NDOR1Q9UHB4 597 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 CDYLQ9Y232 598 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 AP1M2Q9Y6Q5 423 aa18.75■□□□□ 0.59
CLN3-262ENST00000637699 hCG_1818297A0A087WSY0 165 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 H7C0C1 242 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 KLHL41O60662 606 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 IPO13O94829 963 aaKnown RBP18.74■□□□□ 0.59
CLN3-262ENST00000637699 CRTAMO95727 393 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 CTSBP07858 339 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 ADRA1AP35348 466 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 ATP5OP48047 213 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 CD151P48509 253 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 CDKN1CP49918 316 aaPredicted RBP18.74■□□□□ 0.59
CLN3-262ENST00000637699 DCDP81605 110 aaKnown RBP18.74■□□□□ 0.59
CLN3-262ENST00000637699 BOP1Q14137 746 aaKnown RBP18.74■□□□□ 0.59
CLN3-262ENST00000637699 ZIC1Q15915 447 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 RHBDD2Q6NTF9 364 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 ZNF449Q6P9G9 518 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 SNX20Q7Z614 316 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 CUZD1Q86UP6 607 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 CCDC50Q8IVM0 306 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 SRRM1Q8IYB3 904 aaKnown RBP18.74■□□□□ 0.59
CLN3-262ENST00000637699 HEXDCQ8WVB3 486 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 PTERQ96BW5 349 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 GBP5Q96PP8 586 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 HEMGNQ9BXL5 484 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 GOLPH3Q9H4A6 298 aa18.74■□□□□ 0.59
CLN3-262ENST00000637699 NHEJ1Q9H9Q4 299 aaPredicted RBP18.74■□□□□ 0.59
CLN3-262ENST00000637699 DHCR7Q9UBM7 475 aaKnown RBP18.74■□□□□ 0.59
CLN3-262ENST00000637699 H3BMH7 237 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 PSTPIP1O43586 416 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 CNOT3O75175 753 aaKnown RBP18.73■□□□□ 0.59
CLN3-262ENST00000637699 ZRANB2O95218 330 aaKnown RBP eCLIP18.73■□□□□ 0.59
CLN3-262ENST00000637699 UGT2B7P16662 529 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 CYP2A13Q16696 494 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 ZNF658BQ4V348 819 aaPredicted RBP18.73■□□□□ 0.59
CLN3-262ENST00000637699 C1QL3Q5VWW1 255 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 ITPRIPL1Q6GPH6 555 aa18.73■□□□□ 0.59
CLN3-262ENST00000637699 Q6ZS92 163 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms