RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TAF4O00268 1085 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 MATN2O00339 956 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 EIF3HO15372 352 aaKnown RBP eCLIP20.14■□□□□ 0.81
CLN3-240ENST00000631023 CTAGE8P0CG41 777 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 LEPRP48357 1165 aaKnown RBP20.14■□□□□ 0.81
CLN3-240ENST00000631023 MAPK10P53779 464 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 PLTPP55058 493 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 ABRQ12979 859 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 CTAGE6Q86UF2 777 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 VRK3Q8IV63 474 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 CTAGE4Q8IX94 777 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 ZBED8Q8IZ13 594 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 C2CD4AQ8NCU7 369 aaPredicted RBP20.14■□□□□ 0.81
CLN3-240ENST00000631023 OR52E1Q8NGJ3 308 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 PYROXD1Q8WU10 500 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 ART4Q93070 314 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 CD180Q99467 661 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 LRRC1Q9BTT6 524 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 PCDHGA7Q9Y5G6 932 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 ITIH1P19827 911 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 CARSP49589 748 aaKnown RBP20.13■□□□□ 0.81
CLN3-240ENST00000631023 PCBP4P57723 403 aaKnown RBP20.13■□□□□ 0.81
CLN3-240ENST00000631023 MPP1Q00013 466 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 SLC7A5Q01650 507 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 FRG1Q14331 258 aaKnown RBP20.13■□□□□ 0.81
CLN3-240ENST00000631023 CACHD1Q5VU97 1274 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 UNC5DQ6UXZ4 953 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 FAM92BQ6ZTR7 304 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 CLEC14AQ86T13 490 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 AMIGO1Q86WK6 493 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 FAM129CQ86XR2 697 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 CNTN4Q8IWV2 1026 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 MMGT1Q8N4V1 131 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 CFAP61Q8NHU2 1237 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 SNIP1Q8TAD8 396 aaKnown RBP20.13■□□□□ 0.81
CLN3-240ENST00000631023 SKA2Q8WVK7 121 aaPredicted RBP20.13■□□□□ 0.81
CLN3-240ENST00000631023 FOPNLQ96NB1 174 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 B3GNT4Q9C0J1 378 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 RAXQ9Y2V3 346 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 TDRKHQ9Y2W6 561 aaKnown RBP20.13■□□□□ 0.81
CLN3-240ENST00000631023 SNRNP200O75643 2136 aaKnown RBP20.13■□□□□ 0.81
CLN3-240ENST00000631023 CACNA1BQ00975 2339 aa20.13■□□□□ 0.81
CLN3-240ENST00000631023 NVLO15381 856 aaKnown RBP20.12■□□□□ 0.81
CLN3-240ENST00000631023 RRP8O43159 456 aaKnown RBP20.12■□□□□ 0.81
CLN3-240ENST00000631023 HAUS5O94927 633 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 FGF3P11487 239 aaPredicted RBP20.12■□□□□ 0.81
CLN3-240ENST00000631023 CCL4P13236 92 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 TTLL9Q3SXZ7 439 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 DNTTIP2Q5QJE6 756 aaKnown RBP20.12■□□□□ 0.81
CLN3-240ENST00000631023 TEDDM1Q5T9Z0 273 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 TTC23LQ6PF05 361 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 CNSTQ6PJW8 725 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 PRSS42Q7Z5A4 293 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 ZBTB2Q8N680 514 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 KCNJ9Q92806 393 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 FAM136AQ96C01 138 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 TAAR9Q96RI9 348 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 WDR83Q9BRX9 315 aaKnown RBP20.12■□□□□ 0.81
CLN3-240ENST00000631023 SAYSD1Q9NPB0 183 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 KLHL42Q9P2K6 505 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 EFCAB7A8K855 629 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 B4E171 279 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 TLX3O43711 291 aaPredicted RBP20.12■□□□□ 0.81
CLN3-240ENST00000631023 POLR2CP19387 275 aaPredicted RBP20.12■□□□□ 0.81
CLN3-240ENST00000631023 ATP5DP30049 168 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 SLC5A2P31639 672 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 SHMT2P34897 504 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 TSPAN7P41732 249 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 RAB15P59190 212 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 FASTKD3Q14CZ7 662 aaKnown RBP20.12■□□□□ 0.81
CLN3-240ENST00000631023 GALNT7Q86SF2 657 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 PALM2Q8IXS6 379 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 UBXN4Q92575 508 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 USP7Q93009 1102 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 PHACTR1Q9C0D0 580 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 ZNF768Q9H5H4 540 aaKnown RBP20.12■□□□□ 0.81
CLN3-240ENST00000631023 PLAC1Q9HBJ0 212 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 SLC39A1Q9NY26 324 aa20.12■□□□□ 0.81
CLN3-240ENST00000631023 TLCD2A6NGC4 264 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 SRRM3A6NNA2 597 aaPredicted RBP20.11■□□□□ 0.81
CLN3-240ENST00000631023 F7P08709 466 aaPredicted RBP20.11■□□□□ 0.81
CLN3-240ENST00000631023 ETV5P41161 510 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 UGT3A1Q6NUS8 523 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 ZNF549Q6P9A3 640 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 TRMT10BQ6PF06 316 aaKnown RBP20.11■□□□□ 0.81
CLN3-240ENST00000631023 DCUN1D3Q8IWE4 304 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 CARFQ8N187 725 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 CEP112Q8N8E3 955 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 ZNF248Q8NDW4 579 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 FBXO25Q8TCJ0 367 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 ASPSCR1Q9BZE9 553 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 OCIAD1Q9NX40 245 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 ZFATQ9P243 1243 aa20.11■□□□□ 0.81
CLN3-240ENST00000631023 GSAPA4D1B5 854 aa20.1■□□□□ 0.81
CLN3-240ENST00000631023 KIF1CO43896 1103 aaKnown RBP20.1■□□□□ 0.81
CLN3-240ENST00000631023 VPS26AO75436 327 aa20.1■□□□□ 0.81
CLN3-240ENST00000631023 EIF2S3P41091 472 aaKnown RBP20.1■□□□□ 0.81
CLN3-240ENST00000631023 SEPHS1P49903 392 aa20.1■□□□□ 0.81
CLN3-240ENST00000631023 CLCN7P51798 805 aa20.1■□□□□ 0.81
CLN3-240ENST00000631023 PPP1CAP62136 330 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms