RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 TLDC1Q6P9B6 456 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 SARM1Q6SZW1 724 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 SPESP1Q6UW49 350 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 ISLR2Q6UXK2 745 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 APTXQ7Z2E3 356 aaKnown RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 GLT6D1Q7Z4J2 308 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 AMIGO1Q86WK6 493 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 SPATA22Q8NHS9 363 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 HM13Q8TCT9 377 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 CPLX3Q8WVH0 158 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 NR4A3Q92570 626 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 FKBP10Q96AY3 582 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 RBM41Q96IZ5 413 aaKnown RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 VPS50Q96JG6 964 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 LINC00615Q96LM1 132 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 MAGEB10Q96LZ2 347 aaPredicted RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 CHRNA10Q9GZZ6 450 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 LHPPQ9H008 270 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 THAP2Q9H0W7 228 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 DEF6Q9H4E7 631 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 TFB2MQ9H5Q4 396 aaKnown RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 MRM3Q9HC36 420 aaKnown RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 IRAK4Q9NWZ3 460 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 ACTR10Q9NZ32 417 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 HACD3Q9P035 362 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 IL17CQ9P0M4 197 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 DHCR7Q9UBM7 475 aaKnown RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 CDC23Q9UJX2 597 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 PKP3Q9Y446 797 aa9.78□□□□□ -0.84
TRIM28-210ENST00000597618 ANKHD1Q8IWZ3 2542 aaKnown RBP9.78□□□□□ -0.84
TRIM28-210ENST00000597618 A0A0A6YYK5 440 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-210ENST00000597618 IFRD1O00458 451 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-210ENST00000597618 CCL21O00585 134 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 GAPDHSO14556 408 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-210ENST00000597618 PPP1R12AO14974 1030 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-210ENST00000597618 KCNN4O15554 427 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 ALOX12BO75342 701 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 PRAMEF1O95521 474 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 MFAP5Q13361 173 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 PDK1Q15118 436 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 DEFB110Q30KQ9 67 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 GFRALQ6UXV0 394 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 DAAM2Q86T65 1068 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 CDH24Q86UP0 819 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 CFAP206Q8IYR0 622 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 ZNF655Q8N720 491 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-210ENST00000597618 PLD5Q8N7P1 536 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 OR52E1Q8NGJ3 308 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 FERD3LQ96RJ6 166 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 NDC1Q9BTX1 674 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 SPRTNQ9H040 489 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-210ENST00000597618 WDR54Q9H977 334 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 GLOD4Q9HC38 313 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 FAM60AQ9NP50 221 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 HEY1Q9Y5J3 304 aa9.77□□□□□ -0.85
TRIM28-210ENST00000597618 FER1L5A0AVI2 2057 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 MYO7BQ6PIF6 2116 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 LOC285095A0A1B0GVY8 99 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 CCDC78A2IDD5 438 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 SOCS6O14544 535 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 EPOP01588 193 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 ALBP02768 609 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 CYP1A2P05177 515 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 RALBP11234 206 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 SKILP12757 684 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 CA7P43166 264 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 GABRA4P48169 554 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 PRLHRP49683 370 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 ARG2P78540 354 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 NOMO1Q15155 1222 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 TUBB8Q3ZCM7 444 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 SIRPB2Q5JXA9 342 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 FAM182AQ5T1J6 154 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 XKRXQ6PP77 449 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 TMEM207Q6UWW9 146 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 LINC00696Q6ZRV3 163 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 TRIM73Q86UV7 250 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 ADGRF3Q8IZF5 1079 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 ZNF295-AS1Q8N0V1 137 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 LILRA3Q8N6C8 439 aaPredicted RBP9.76□□□□□ -0.85
TRIM28-210ENST00000597618 OR1N1Q8NGS0 311 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 ZNF398Q8TD17 642 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 BLOC1S5Q8TDH9 187 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.76□□□□□ -0.85
TRIM28-210ENST00000597618 DENND1AQ8TEH3 1009 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 DLG3Q92796 817 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 DCUN1D1Q96GG9 259 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 THOC3Q96J01 351 aaKnown RBP9.76□□□□□ -0.85
TRIM28-210ENST00000597618 OLFM3Q96PB7 478 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 RNF157Q96PX1 679 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 LMF1Q96S06 567 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 MVB12BQ9H7P6 319 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 UBP1Q9NZI7 540 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 FAM153AQ9UHL3 310 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 HS3ST3B1Q9Y662 390 aa9.76□□□□□ -0.85
TRIM28-210ENST00000597618 TRAV17A0A0B4J275 112 aa9.75□□□□□ -0.85
TRIM28-210ENST00000597618 C17orf113A0A1B0GUU1 675 aa9.75□□□□□ -0.85
TRIM28-210ENST00000597618 A0A1B0GX78 115 aa9.75□□□□□ -0.85
TRIM28-210ENST00000597618 DYTNA2CJ06 578 aa9.75□□□□□ -0.85
TRIM28-210ENST00000597618 ZNF487B1APH4 448 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms