RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 PRR5-ARHGAP8B1AHC4 643 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 KLK8O60259 260 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 SHOX2O60902 331 aaPredicted RBP14.3□□□□□ -0.12
VRK3-212ENST00000596814 SERPINE1P05121 402 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 HIST1H2AGP0C0S8 130 aaPredicted RBP14.3□□□□□ -0.12
VRK3-212ENST00000596814 CTSEP14091 401 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 JUNDP17535 347 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 HIST1H2ADP20671 130 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 ALDH18A1P54886 795 aaKnown RBP14.3□□□□□ -0.12
VRK3-212ENST00000596814 AP1S2P56377 157 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 CDKL1Q00532 357 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.3□□□□□ -0.12
VRK3-212ENST00000596814 ATG16L1Q676U5 607 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 SLC30A9Q6PML9 568 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 CCL4L1Q8NHW4 92 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 TFGQ92734 400 aaPredicted RBP14.3□□□□□ -0.12
VRK3-212ENST00000596814 HIST1H2AHQ96KK5 128 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 TMEM237Q96Q45 408 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 HIST1H2AJQ99878 128 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 H2AFJQ9BTM1 129 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 GSDMCQ9BYG8 508 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 ARL15Q9NXU5 204 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 ASF1AQ9Y294 204 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 WDR37Q9Y2I8 494 aa14.3□□□□□ -0.12
VRK3-212ENST00000596814 TDRD6O60522 2096 aaKnown RBP14.3□□□□□ -0.12
VRK3-212ENST00000596814 TCP11X1B4DZS4 312 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 STX16-NPEPL1H3BU86 382 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 STX16O14662 325 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 KLF11O14901 512 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 C1orf105O95561 183 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 CSF2P04141 144 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 RPN2P04844 631 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 ANXA5P08758 320 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 NME1P15531 152 aaKnown RBP14.29□□□□□ -0.12
VRK3-212ENST00000596814 HERVK_113P63132 956 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 SETDB1Q15047 1291 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 UAP1L1Q3KQV9 507 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 CAPRIN2Q6IMN6 1127 aaKnown RBP14.29□□□□□ -0.12
VRK3-212ENST00000596814 MBOAT1Q6ZNC8 495 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 FBXO15Q8NCQ5 510 aaPredicted RBP14.29□□□□□ -0.12
VRK3-212ENST00000596814 GPBAR1Q8TDU6 330 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 C12orf66Q96MD2 445 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 GATA5Q9BWX5 397 aaPredicted RBP14.29□□□□□ -0.12
VRK3-212ENST00000596814 ERVK-6Q9BXR3 956 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 PRDM8Q9NQV8 689 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 PILRBQ9UKJ0 227 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 PRR33A8MZF0 331 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 GALR2O43603 387 aaPredicted RBP14.29□□□□□ -0.12
VRK3-212ENST00000596814 GRK2P25098 689 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 HALP42357 657 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 NAGLUP54802 743 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 BST1Q10588 318 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 STX3Q13277 289 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 SIM2Q14190 667 aaPredicted RBP14.29□□□□□ -0.12
VRK3-212ENST00000596814 CFAP157Q5JU67 520 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 CDKL4Q5MAI5 379 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 SULT1C3Q6IMI6 304 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 NRROSQ86YC3 692 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 DCUN1D3Q8IWE4 304 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 TCAIMQ8N3R3 496 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 CCNYL1Q8N7R7 359 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 OR6Y1Q8NGX8 325 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 MAGEC3Q8TD91 643 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 L3HYPDHQ96EM0 354 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 LRRC61Q9BV99 259 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 CAAP1Q9H8G2 361 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 WWOXQ9NZC7 414 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 TBC1D29Q9UFV1 150 aa14.29□□□□□ -0.12
VRK3-212ENST00000596814 CFAP20Q9Y6A4 193 aaKnown RBP14.29□□□□□ -0.12
VRK3-212ENST00000596814 KNL1Q8NG31 2342 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 A0A1B0GVT2 93 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 TMEM114B3SHH9 223 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 SIX3O95343 332 aaPredicted RBP14.28□□□□□ -0.12
VRK3-212ENST00000596814 VIMP08670 466 aaKnown RBP14.28□□□□□ -0.12
VRK3-212ENST00000596814 IMPDH1P20839 514 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 EEF1DP29692 281 aaKnown RBP14.28□□□□□ -0.12
VRK3-212ENST00000596814 NUBP1P53384 320 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 PRRT3Q5FWE3 981 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 ZNF678Q5SXM1 525 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 CES4AQ5XG92 561 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 DUS1LQ6P1R4 473 aaKnown RBP14.28□□□□□ -0.12
VRK3-212ENST00000596814 TTC23LQ6PF05 361 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 WASH2PQ6VEQ5 465 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 PRR23BQ6ZRT6 265 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 SYT12Q8IV01 421 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 OR5AR1Q8NGP9 310 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 OR5K2Q8NHB8 316 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 PIGKQ92643 395 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 RHBDF1Q96CC6 855 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 CHMP6Q96FZ7 201 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 INSM2Q96T92 566 aaPredicted RBP14.28□□□□□ -0.12
VRK3-212ENST00000596814 COL25A1Q9BXS0 654 aaPredicted RBP14.28□□□□□ -0.12
VRK3-212ENST00000596814 TRIT1Q9H3H1 467 aaKnown RBP14.28□□□□□ -0.12
VRK3-212ENST00000596814 WASH6PQ9NQA3 447 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 TMEM74BQ9NUR3 256 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 IMP3Q9NV31 184 aaKnown RBP14.28□□□□□ -0.12
VRK3-212ENST00000596814 PTBP2Q9UKA9 531 aaKnown RBP14.28□□□□□ -0.12
VRK3-212ENST00000596814 PCOLCE2Q9UKZ9 415 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 CACNA1EQ15878 2313 aa14.28□□□□□ -0.12
VRK3-212ENST00000596814 KRT87PA6NCN2 255 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms