RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CALB2P22676 271 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 CCR8P51685 355 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 SLC5A9Q2M3M2 681 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 LSM12Q3MHD2 195 aaKnown RBP9.65□□□□□ -0.87
LIG3-216ENST00000593099 FBXO48Q5FWF7 155 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 TRAF7Q6Q0C0 670 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 RANBP10Q6VN20 620 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 DNAJC5GQ8N7S2 189 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 OR4E2Q8NGC2 313 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 PPCDCQ96CD2 204 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 IL21Q9HBE4 155 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 PREBQ9HCU5 417 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 SNX7Q9UNH6 387 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 AP3M1Q9Y2T2 418 aa9.65□□□□□ -0.87
LIG3-216ENST00000593099 A0A1B0GW55 424 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 DUX4L2P0CJ85 424 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 DUX4L3P0CJ86 424 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 DUX4L4P0CJ87 422 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 DUX4L5P0CJ88 424 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 DUX4L6P0CJ89 424 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 DUX4L7P0CJ90 424 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 VARSP26640 1264 aaKnown RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 AVPR1BP47901 424 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 ARF5P84085 180 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 MSS51Q4VC12 460 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 PARS2Q7L3T8 475 aaKnown RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 GPR180Q86V85 440 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 CAMKK1Q8N5S9 505 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 Q8N9G6 341 aaPredicted RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 ZCCHC10Q8TBK6 192 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 CDX2Q99626 313 aaPredicted RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 CCT7Q99832 543 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 DPYSL5Q9BPU6 564 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 TMEM245Q9H330 911 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 LRTM1Q9HBL6 345 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 SLC17A6Q9P2U8 582 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 THAP10Q9P2Z0 257 aaPredicted RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 DUX4Q9UBX2 424 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 MYH10P35580 1976 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 KCNJ13O60928 360 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 ENO2P09104 434 aaPredicted RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 GSTM1P09488 218 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 IL4RP24394 825 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 TARSP26639 723 aaKnown RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 PREPP48147 710 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 GSTM4Q03013 218 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 CYP4Z1Q86W10 505 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 PARP9Q8IXQ6 854 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 C2CD4AQ8NCU7 369 aaPredicted RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 RTP4Q96DX8 246 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 CHFRQ96EP1 664 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 HSPA12BQ96MM6 686 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 GPR22Q99680 433 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 ING2Q9H160 280 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 MAP10Q9P2G4 905 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 V9GYQ6 96 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 BPIP17213 487 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 EEF1B2P24534 225 aaKnown RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 SHMT2P34897 504 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 MLLT3P42568 568 aaPredicted RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 ASMTP46597 345 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 CHRNB3Q05901 458 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 SEMA3AQ14563 771 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 MAPKAPK3Q16644 382 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 ZNF542PQ5EBM4 170 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 RBM20Q5T481 1227 aaKnown RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 DPPA4Q7L190 304 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 OXR1Q8N573 874 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 KCNV2Q8TDN2 545 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 ESAMQ96AP7 390 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 LENG8Q96PV6 779 aaPredicted RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 ATP6V1HQ9UI12 483 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 DMTF1Q9Y222 760 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 C9J4A7 227 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 TYRP1P17643 537 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 ACRV1P26436 265 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 SERPINB3P29508 390 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 SLC26A3P40879 764 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 SP140Q13342 867 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 SQLEQ14534 574 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 SNX32Q86XE0 403 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 PEX5LQ8IYB4 626 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 TMEM237Q96Q45 408 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 STRADBQ9C0K7 418 aa9.64□□□□□ -0.87
LIG3-216ENST00000593099 SSU72Q9NP77 194 aaKnown RBP9.64□□□□□ -0.87
LIG3-216ENST00000593099 CXorf49A8MYA2 514 aaPredicted RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 C2CD4DB7Z1M9 353 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 TRIM24O15164 1050 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 LYPLA1O75608 230 aaPredicted RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 NTRK1P04629 796 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 GLULP15104 373 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 EPORP19235 508 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 BDKRB1P46663 353 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 CLK3P49761 638 aaKnown RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 ERFP50548 548 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 ANXA8L1Q5VT79 327 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 RIPOR1Q6ZS17 1223 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 KRT73Q86Y46 540 aa9.63□□□□□ -0.87
LIG3-216ENST00000593099 CBARPQ8N350 705 aaPredicted RBP9.63□□□□□ -0.87
LIG3-216ENST00000593099 DCBLD1Q8N8Z6 715 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms