RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	PKP4	Q99569	1192 aa		4.2	□□□□□ -1.74
CHD9-215	ENST00000565442	NUP85	Q9BW27	656 aa		4.2	□□□□□ -1.74
CHD9-215	ENST00000565442	ACKR4	Q9NPB9	350 aa		4.2	□□□□□ -1.74
CHD9-215	ENST00000565442	TUBE1	Q9UJT0	475 aa		4.2	□□□□□ -1.74
CHD9-215	ENST00000565442	FAF1	Q9UNN5	650 aa	Predicted RBP	4.2	□□□□□ -1.74
CHD9-215	ENST00000565442	GRIP1	Q9Y3R0	1128 aa		4.2	□□□□□ -1.74
CHD9-215	ENST00000565442	DOCK7	Q96N67	2140 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442		A0A087WYN8	130 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	TMEM221	A6NGB7	291 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	BUB3	O43684	328 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	CTSV	O60911	334 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	PDE9A	O76083	593 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	FYN	P06241	537 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	CETP	P11597	493 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	ACHE	P22303	614 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	AZGP1	P25311	298 aa	Known RBP	4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	MTHFR	P42898	656 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	CCR10	P46092	362 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	SLC9A3	P48764	834 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	THOP1	P52888	689 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	RPS18	P62269	152 aa	Known RBP	4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	PITX1	P78337	314 aa	Predicted RBP	4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	PTPRCAP	Q14761	206 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	MDH1B	Q5I0G3	518 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	FAM198B	Q6UWH4	519 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	FOXL2NB	Q6ZUU3	175 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	CCDC186	Q7Z3E2	898 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	COMMD2	Q86X83	199 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	CAMKV	Q8NCB2	501 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	KIF18A	Q8NI77	898 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	ARSG	Q96EG1	525 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	SIPA1	Q96FS4	1042 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	C17orf77	Q96MU5	243 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	ZNF558	Q96NG5	402 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	SEPHS2	Q99611	448 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	TRAF4	Q9BUZ4	470 aa	Predicted RBP	4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	PELI2	Q9HAT8	420 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	APOBEC3G	Q9HC16	384 aa	Known RBP	4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	STK26	Q9P289	416 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	ANAPC5	Q9UJX4	755 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	RNF150	Q9ULK6	438 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	PADI2	Q9Y2J8	665 aa		4.19	□□□□□ -1.74
CHD9-215	ENST00000565442	IGLV5-45	A0A087WSX0	123 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442		A0A1B0GUV1	79 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	GRID2	O43424	1007 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	IGHV4-39	P01824	125 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	FDPS	P14324	419 aa	Known RBP	4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	CYP11B2	P19099	503 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	PTPN3	P26045	913 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	ERVFC1-1	P60608	527 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	DMPK	Q09013	629 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	ILF3	Q12906	894 aa	Known RBP eCLIP	4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	MFAP5	Q13361	173 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	IL27RA	Q6UWB1	636 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	C9orf139	Q6ZV77	190 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	CFAP206	Q8IYR0	622 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	ARHGAP24	Q8N264	748 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	CPSF7	Q8N684	471 aa	Known RBP	4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	DMBX1	Q8NFW5	382 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	RNF128	Q8TEB7	428 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	BTBD10	Q9BSF8	475 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	UPF2	Q9HAU5	1272 aa	Known RBP	4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	MYNN	Q9NPC7	610 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	DONSON	Q9NYP3	566 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442	JRKL	Q9Y4A0	524 aa		4.18	□□□□□ -1.74
CHD9-215	ENST00000565442		A0A1W2PPI3	338 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	LINC01565	O15544	149 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	XPNPEP2	O43895	674 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	PENK	P01210	267 aa	Predicted RBP	4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	ATP1A1	P05023	1023 aa	Known RBP	4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	QDPR	P09417	244 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	RAB40AL	P0C0E4	278 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	AMD1	P17707	334 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	NR1D1	P20393	614 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	PTAFR	P25105	342 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	MPZ	P25189	248 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	EPHA2	P29317	976 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	HSPA4	P34932	840 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	HOXA1	P49639	335 aa	Predicted RBP	4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	RBPJ	Q06330	500 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	ACSM1	Q08AH1	577 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	GAGE5	Q13069	117 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	GAGE6	Q13070	117 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	KIR2DS3	Q14952	304 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	PLA2G4F	Q68DD2	849 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	CORO6	Q6QEF8	472 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	SUSD1	Q6UWL2	747 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	PPP1R21	Q6ZMI0	780 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	ANO5	Q75V66	913 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	ZNF771	Q7L3S4	317 aa	Predicted RBP	4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	DET1	Q7L5Y6	550 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	TMPRSS11B	Q86T26	416 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	MFN1	Q8IWA4	741 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	GPALPP1	Q8IXQ4	340 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	CIART	Q8N365	385 aa	Predicted RBP	4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	METTL27	Q8N6F8	245 aa	Predicted RBP	4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	SLC24A4	Q8NFF2	622 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	SYN2	Q92777	582 aa	Predicted RBP	4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	VN1R1	Q9GZP7	353 aa		4.17	□□□□□ -1.74
CHD9-215	ENST00000565442	TCF7L2	Q9NQB0	619 aa		4.17	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms