RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ZNF839A8K0R7 811 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 NCF1CA8MVU1 366 aaPredicted RBP12.51□□□□□ -0.41
CLK3-214ENST00000564096 ARHGEF33A8MVX0 844 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 TARM1B6A8C7 271 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 GFYI3L273 518 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 KLF11O14901 512 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 SCAMP1O15126 338 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 SNUPNO95149 360 aaKnown RBP12.51□□□□□ -0.41
CLK3-214ENST00000564096 FUCA1P04066 466 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 SERPINE1P05121 402 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 NCF1P14598 390 aaPredicted RBP12.51□□□□□ -0.41
CLK3-214ENST00000564096 RPL10P27635 214 aaKnown RBP12.51□□□□□ -0.41
CLK3-214ENST00000564096 NDUFS1P28331 727 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 PDHA2P29803 388 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 ALDH3A1P30838 453 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 BDKRB1P46663 353 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 RPIAP49247 311 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 DNAJB13P59910 316 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 GNGT1P63211 74 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 KRT33BQ14525 404 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 CHI3L2Q15782 390 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 PHKG1Q16816 387 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 PFKFB4Q16877 469 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 DUOXA1Q1HG43 343 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 PRRT3Q5FWE3 981 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 SULT1C3Q6IMI6 304 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 IL27RAQ6UWB1 636 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 TAF8Q7Z7C8 310 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 C10orf107Q8IVU9 208 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 SDR16C5Q8N3Y7 309 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 GPBAR1Q8TDU6 330 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 UBTD2Q8WUN7 234 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 CKAP2Q8WWK9 683 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 TFGQ92734 400 aaPredicted RBP12.51□□□□□ -0.41
CLK3-214ENST00000564096 RAD51AP1Q96B01 352 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 LOXL4Q96JB6 756 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 CCDC138Q96M89 665 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 C12orf66Q96MD2 445 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 MECRQ9BV79 373 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 LRRC61Q9BV99 259 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 RAB11FIP5Q9BXF6 653 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 NSRP1Q9H0G5 558 aaKnown RBP12.51□□□□□ -0.41
CLK3-214ENST00000564096 STN1Q9H668 368 aaKnown RBP12.51□□□□□ -0.41
CLK3-214ENST00000564096 CCDC134Q9H6E4 229 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 MVB12BQ9H7P6 319 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 C11orf16Q9NQ32 467 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 IMP3Q9NV31 184 aaKnown RBP12.51□□□□□ -0.41
CLK3-214ENST00000564096 POLG2Q9UHN1 485 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 IKZF3Q9UKT9 509 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 PCOLCE2Q9UKZ9 415 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 PSMD13Q9UNM6 376 aa12.51□□□□□ -0.41
CLK3-214ENST00000564096 ZDBF2Q9HCK1 2354 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 TTC28Q96AY4 2481 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 OR5K4A6NMS3 321 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 TMEM114B3SHH9 223 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 MYO1CO00159 1063 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 KLK8O60259 260 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 DLX3O60479 287 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 C1orf105O95561 183 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 GUCA1CO95843 209 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 CFIP05156 583 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 SBK3P0C264 359 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 MTHFD1P11586 935 aaKnown RBP12.5□□□□□ -0.41
CLK3-214ENST00000564096 F3P13726 295 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 BGNP21810 368 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 AK4P27144 223 aaPredicted RBP12.5□□□□□ -0.41
CLK3-214ENST00000564096 ACADLP28330 430 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 HSD17B2P37059 387 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 CTSKP43235 329 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 PIK3CGP48736 1102 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 HERVK_113P63132 956 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 SETDB1Q15047 1291 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 ZNF542PQ5EBM4 170 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 CAPRIN2Q6IMN6 1127 aaKnown RBP12.5□□□□□ -0.41
CLK3-214ENST00000564096 METTL2BQ6P1Q9 378 aaKnown RBP12.5□□□□□ -0.41
CLK3-214ENST00000564096 XKR5Q6UX68 686 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 RGS9BPQ6ZS82 235 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 SPATS2Q86XZ4 545 aaKnown RBP12.5□□□□□ -0.41
CLK3-214ENST00000564096 TRIM48Q8IWZ4 208 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 TBC1D21Q8IYX1 336 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 KIRREL3Q8IZU9 778 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 TMEM151AQ8N4L1 468 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 OR5K2Q8NHB8 316 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 PPP4R1Q8TF05 950 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 CXorf40BQ96DE9 158 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 PHF21BQ96EK2 531 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 TRMOQ9BU70 441 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 ERVK-6Q9BXR3 956 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 ZDHHC5Q9C0B5 715 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 MANSC1Q9H8J5 431 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 SPATA7Q9P0W8 599 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 TAAR2Q9P1P5 351 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 PDE10AQ9Y233 779 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 STK38LQ9Y2H1 464 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 PCDHGA5Q9Y5G8 931 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 COLEC10Q9Y6Z7 277 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 EML5Q05BV3 1969 aa12.5□□□□□ -0.41
CLK3-214ENST00000564096 TRIOO75962 3097 aa12.49□□□□□ -0.41
CLK3-214ENST00000564096 BDP1A6H8Y1 2624 aa12.49□□□□□ -0.41
CLK3-214ENST00000564096 KIR2DS5A0A0G2JLQ3 304 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms