RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MLIPQ5VWP3 458 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 SLC6A19Q695T7 634 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 AADACL2Q6P093 401 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 SARM1Q6SZW1 724 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 MED25Q71SY5 747 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 TAS2R42Q7RTR8 314 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 TRIM73Q86UV7 250 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 ADGRF3Q8IZF5 1079 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 TMEM102Q8N9M5 508 aaPredicted RBP16.33■□□□□ 0.2
CLN3-211ENST00000564091 TC2NQ8N9U0 490 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 GLIS1Q8NBF1 620 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 SSC4DQ8WTU2 575 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 TFGQ92734 400 aaPredicted RBP16.33■□□□□ 0.2
CLN3-211ENST00000564091 SPATA13Q96N96 652 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 MVB12BQ9H7P6 319 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 FAM60AQ9NP50 221 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 CASS4Q9NQ75 786 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 GPR83Q9NYM4 423 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 G3BP2Q9UN86 482 aaKnown RBP16.33■□□□□ 0.2
CLN3-211ENST00000564091 PCDHA3Q9Y5H8 950 aa16.33■□□□□ 0.2
CLN3-211ENST00000564091 IGLV3-16A0A075B6K0 115 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 C2orf74A8MZ97 194 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 PJA2O43164 708 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 HCRTR1O43613 425 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 STK10O94804 968 aaKnown RBP16.32■□□□□ 0.2
CLN3-211ENST00000564091 MSL3P1P0C860 447 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 CBSLP0DN79 551 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 AGXTP21549 392 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 CBSP35520 551 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 CD151P48509 253 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 COPS2P61201 443 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 BOP1Q14137 746 aaKnown RBP16.32■□□□□ 0.2
CLN3-211ENST00000564091 GPR33Q49SQ1 333 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 C1orf189Q5VU69 101 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 ZNF385CQ66K41 422 aaPredicted RBP16.32■□□□□ 0.2
CLN3-211ENST00000564091 PIANPQ8IYJ0 282 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 C19orf60Q96EN9 201 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 SPRTNQ9H040 489 aaPredicted RBP16.32■□□□□ 0.2
CLN3-211ENST00000564091 ICKQ9UPZ9 632 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 PRSS21Q9Y6M0 314 aa16.32■□□□□ 0.2
CLN3-211ENST00000564091 TRBV5-4A0A0C4DH59 114 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 A1L4Q6 167 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 C9J4A7 227 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 KRT86O43790 486 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 KLF7O75840 302 aaPredicted RBP16.31■□□□□ 0.2
CLN3-211ENST00000564091 CTSBP07858 339 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 CTNNA1P35221 906 aaKnown RBP16.31■□□□□ 0.2
CLN3-211ENST00000564091 RRADP55042 308 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 FOXL2P58012 376 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 RPA4Q13156 261 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 SPA17Q15506 151 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 ZIC1Q15915 447 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 KYNUQ16719 465 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 DEFB110Q30KQ9 67 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 ZNF449Q6P9G9 518 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 SPESP1Q6UW49 350 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 UNC5AQ6ZN44 842 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 RAB43Q86YS6 212 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 OR5AR1Q8NGP9 310 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 N4BP2L2Q92802 583 aaPredicted RBP16.31■□□□□ 0.2
CLN3-211ENST00000564091 PNPLA2Q96AD5 504 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 SGSM3Q96HU1 749 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 SMAD5Q99717 465 aaKnown RBP16.31■□□□□ 0.2
CLN3-211ENST00000564091 TSPY26PQ9H489 355 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 VPS37BQ9H9H4 285 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 ARNT2Q9HBZ2 717 aa16.31■□□□□ 0.2
CLN3-211ENST00000564091 PIH1D1Q9NWS0 290 aaKnown RBP16.31■□□□□ 0.2
CLN3-211ENST00000564091 ZNF106Q9H2Y7 1883 aaKnown RBP16.31■□□□□ 0.2
CLN3-211ENST00000564091 MED13Q9UHV7 2174 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 RCCD1A6NED2 376 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 HBQ1P09105 142 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 UGT2B7P16662 529 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 BRD3Q15059 726 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 DBN1Q16643 649 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 NAPRTQ6XQN6 538 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 MRGPREQ86SM8 312 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 HOOK3Q86VS8 718 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 GPR135Q8IZ08 494 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 C19orf47Q8N9M1 422 aaKnown RBP16.3■□□□□ 0.2
CLN3-211ENST00000564091 PRR7Q8TB68 274 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 CDKN2AIPNLQ96HQ2 116 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 C19orf43Q9BQ61 176 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 DPH2Q9BQC3 489 aaPredicted RBP16.3■□□□□ 0.2
CLN3-211ENST00000564091 DHRS4Q9BTZ2 278 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 NLE1Q9NVX2 485 aaPredicted RBP16.3■□□□□ 0.2
CLN3-211ENST00000564091 SPHK1Q9NYA1 384 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 SMARCAL1Q9NZC9 954 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 FEZ2Q9UHY8 353 aaPredicted RBP16.3■□□□□ 0.2
CLN3-211ENST00000564091 EFR3BQ9Y2G0 817 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 PADI2Q9Y2J8 665 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 DUSP10Q9Y6W6 482 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 SPTBP11277 2137 aa16.3■□□□□ 0.2
CLN3-211ENST00000564091 CCDC78A2IDD5 438 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 H3BMH7 237 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 H7C0S8 307 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 MASP2O00187 686 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 OR2B3O76000 313 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 METTL18O95568 372 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 TPBGLP0DKB5 382 aa16.29■□□□□ 0.2
CLN3-211ENST00000564091 PTPN7P35236 360 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms