RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 GPR3P46089 330 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 SLCO1A2P46721 670 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 FASLGP48023 281 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 HHEXQ03014 270 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 SP140Q13342 867 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 BMPR2Q13873 1038 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 CLCA4Q14CN2 919 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 ZKSCAN8Q15776 578 aaPredicted RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 TSNAXIP1Q2TAA8 658 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 CEP85LQ5SZL2 805 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 UBAP2Q5T6F2 1119 aaKnown RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 C17orf82Q86X59 251 aaPredicted RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 DCUN1D3Q8IWE4 304 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 SFRP1Q8N474 314 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 ARL14Q8N4G2 192 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 GOLGA6L1Q8N7Z2 621 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 ACVR1CQ8NER5 493 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 CFAP61Q8NHU2 1237 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 WDR48Q8TAF3 677 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 SLC37A2Q8TED4 501 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 EEF1AKMT1Q8WVE0 214 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 ISL2Q96A47 359 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 CNDP2Q96KP4 475 aaKnown RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 RMDN2Q96LZ7 410 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 ZIM3Q96PE6 472 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 SLC38A3Q99624 504 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 OLFM1Q99784 485 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 RAB11FIP5Q9BXF6 653 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 DERL2Q9GZP9 239 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 VPS11Q9H270 941 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 IMP3Q9NV31 184 aaKnown RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 SENP1Q9P0U3 644 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 GALPQ9UBC7 116 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 CTNNAL1Q9UBT7 734 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 TBK1Q9UHD2 729 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 DCDC2Q9UHG0 476 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 LGALS13Q9UHV8 139 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 LNPEPQ9UIQ6 1025 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 NOVA2Q9UNW9 492 aaKnown RBP9.01□□□□□ -0.97
LDLR-210ENST00000559340 CDYLQ9Y232 598 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 MED16Q9Y2X0 877 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 ST14Q9Y5Y6 855 aa9.01□□□□□ -0.97
LDLR-210ENST00000559340 DCHS1Q96JQ0 3298 aa9□□□□□ -0.97
LDLR-210ENST00000559340 NCOR2Q9Y618 2525 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CPED1A4D0V7 1026 aa9□□□□□ -0.97
LDLR-210ENST00000559340 EME2A4GXA9 379 aaPredicted RBP9□□□□□ -0.97
LDLR-210ENST00000559340 TRIM38O00635 465 aa9□□□□□ -0.97
LDLR-210ENST00000559340 PHGDHO43175 533 aaKnown RBP9□□□□□ -0.97
LDLR-210ENST00000559340 TNFSF14O43557 240 aa9□□□□□ -0.97
LDLR-210ENST00000559340 SH3BP5O60239 455 aa9□□□□□ -0.97
LDLR-210ENST00000559340 PSIP1O75475 530 aaKnown RBP9□□□□□ -0.97
LDLR-210ENST00000559340 KLHL2O95198 593 aa9□□□□□ -0.97
LDLR-210ENST00000559340 GSTA1P08263 222 aa9□□□□□ -0.97
LDLR-210ENST00000559340 ENO2P09104 434 aaPredicted RBP9□□□□□ -0.97
LDLR-210ENST00000559340 RBP1P09455 135 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CCDC166P0CW27 439 aa9□□□□□ -0.97
LDLR-210ENST00000559340 GIMD1P0DJR0 217 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CKMT1AP12532 417 aa9□□□□□ -0.97
LDLR-210ENST00000559340 BRAFP15056 766 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CSRP1P21291 193 aaKnown RBP9□□□□□ -0.97
LDLR-210ENST00000559340 GCAP28676 217 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CCT5P48643 541 aa9□□□□□ -0.97
LDLR-210ENST00000559340 PPM1FP49593 454 aaPredicted RBP9□□□□□ -0.97
LDLR-210ENST00000559340 EPHA4P54764 986 aa9□□□□□ -0.97
LDLR-210ENST00000559340 UBE2IP63279 158 aaKnown RBP9□□□□□ -0.97
LDLR-210ENST00000559340 TIAL1Q01085 375 aaKnown RBP eCLIP9□□□□□ -0.97
LDLR-210ENST00000559340 E2F1Q01094 437 aa9□□□□□ -0.97
LDLR-210ENST00000559340 ILKQ13418 452 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CSHL1Q14406 222 aa9□□□□□ -0.97
LDLR-210ENST00000559340 ACAP2Q15057 778 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CLPPQ16740 277 aaPredicted RBP9□□□□□ -0.97
LDLR-210ENST00000559340 PROX2Q3B8N5 592 aa9□□□□□ -0.97
LDLR-210ENST00000559340 FBXO38Q6PIJ6 1188 aa9□□□□□ -0.97
LDLR-210ENST00000559340 NAPRTQ6XQN6 538 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CYHR1Q6ZMK1 362 aa9□□□□□ -0.97
LDLR-210ENST00000559340 TMEM26Q6ZUK4 368 aa9□□□□□ -0.97
LDLR-210ENST00000559340 UBE2R2Q712K3 238 aaPredicted RBP9□□□□□ -0.97
LDLR-210ENST00000559340 ADAMTSL2Q86TH1 951 aa9□□□□□ -0.97
LDLR-210ENST00000559340 PIM3Q86V86 326 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CEP97Q8IW35 865 aa9□□□□□ -0.97
LDLR-210ENST00000559340 SLC35F3Q8IY50 421 aa9□□□□□ -0.97
LDLR-210ENST00000559340 LILRA3Q8N6C8 439 aaPredicted RBP9□□□□□ -0.97
LDLR-210ENST00000559340 FBXO15Q8NCQ5 510 aaPredicted RBP9□□□□□ -0.97
LDLR-210ENST00000559340 OR2W6PQ8NHA6 318 aa9□□□□□ -0.97
LDLR-210ENST00000559340 OR5K2Q8NHB8 316 aa9□□□□□ -0.97
LDLR-210ENST00000559340 STAG3L4Q8TBR4 150 aa9□□□□□ -0.97
LDLR-210ENST00000559340 EPS8L3Q8TE67 593 aaKnown RBP9□□□□□ -0.97
LDLR-210ENST00000559340 ATL1Q8WXF7 558 aa9□□□□□ -0.97
LDLR-210ENST00000559340 ASB11Q8WXH4 323 aa9□□□□□ -0.97
LDLR-210ENST00000559340 ALKBH8Q96BT7 664 aaKnown RBP9□□□□□ -0.97
LDLR-210ENST00000559340 AHCYL2Q96HN2 611 aaKnown RBP9□□□□□ -0.97
LDLR-210ENST00000559340 DPYSL5Q9BPU6 564 aa9□□□□□ -0.97
LDLR-210ENST00000559340 SLC12A9Q9BXP2 914 aa9□□□□□ -0.97
LDLR-210ENST00000559340 TFB2MQ9H5Q4 396 aaKnown RBP9□□□□□ -0.97
LDLR-210ENST00000559340 KIR3DX1Q9H7L2 352 aa9□□□□□ -0.97
LDLR-210ENST00000559340 CAB39LQ9H9S4 337 aa9□□□□□ -0.97
LDLR-210ENST00000559340 PARVBQ9HBI1 364 aa9□□□□□ -0.97
LDLR-210ENST00000559340 RXFP3Q9NSD7 469 aa9□□□□□ -0.97
LDLR-210ENST00000559340 ZNF624Q9P2J8 865 aaPredicted RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms