RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 MASP1P48740 699 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 HSPA7P48741 367 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 HTR6P50406 440 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ESRRGP62508 458 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 PLOD1Q02809 727 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 MERTKQ12866 999 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 LMAN2Q12907 356 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SP140Q13342 867 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CHRNA6Q15825 494 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CDKN3Q16667 212 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 GGTA1PQ4G0N0 100 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 FAM98BQ52LJ0 330 aaKnown RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 FBXO48Q5FWF7 155 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 RABL3Q5HYI8 236 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SCIMPQ6UWF3 145 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 TRIM46Q7Z4K8 759 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 KIAA2013Q8IYS2 634 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 APCDD1Q8J025 514 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SIX5Q8N196 739 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CBR4Q8N4T8 237 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 FIBCD1Q8N539 461 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 PLPP7Q8NBV4 271 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 WFDC5Q8TCV5 224 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SLC13A3Q8WWT9 602 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ZDHHC16Q969W1 377 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 RHBDF1Q96CC6 855 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 EID2BQ96D98 161 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ASIC4Q96FT7 647 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 TEX37Q96LM6 180 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF641Q96N77 438 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CDK15Q96Q40 435 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CGREF1Q99674 301 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 SLC29A1Q99808 456 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 APOL5Q9BWW9 433 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 YTHDF1Q9BYJ9 559 aaKnown RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 OSBPL6Q9BZF3 934 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 RBM38Q9H0Z9 239 aaKnown RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 IL26Q9NPH9 171 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 DNAAF2Q9NVR5 837 aaKnown RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 DUS2Q9NX74 493 aaKnown RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 WBP1LQ9NX94 342 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 CFAP97Q9P2B7 532 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 RNF11Q9Y3C5 154 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 PPIL1Q9Y3C6 166 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 ASB1Q9Y576 335 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 HELZP42694 1942 aaKnown RBP7.13□□□□□ -1.27
VPS13C-206ENST00000558338 DENND4CQ5VZ89 1909 aa7.13□□□□□ -1.27
VPS13C-206ENST00000558338 H0YAE9 185 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 K7ERQ8 282 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 ANKRD28O15084 1053 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 GRM6O15303 877 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 SLC16A5O15375 505 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 TAPBPO15533 448 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 ULK1O75385 1050 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 STK16O75716 305 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 CLDN7O95471 211 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 PRAMEF12O95522 483 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 FGF19O95750 216 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 CNPP09543 421 aaKnown RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 MPC1LP0DKB6 136 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 RAP2AP10114 183 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 G6PDP11413 515 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 SLC2A4P14672 509 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 ACPPP15309 386 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 CKMT2P17540 419 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 DDX6P26196 483 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 IL12AP29459 219 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 OXTRP30559 389 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 TTKP33981 857 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 HNMTP50135 292 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 HNRNPFP52597 415 aaKnown RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 RPL38P63173 70 aaKnown RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 EPS8Q12929 822 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 ABRAXAS2Q15018 415 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 FUT11Q495W5 492 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 C10orf62Q5T681 223 aaPredicted RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 AP1ARQ63HQ0 302 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 TXNDC8Q6A555 127 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 GLYATQ6IB77 296 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 C22orf39Q6P5X5 142 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 SLC2A7Q6PXP3 512 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 SLC39A5Q6ZMH5 540 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 MSANTD1Q6ZTZ1 278 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 IFNEQ86WN2 208 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 EPHX4Q8IUS5 362 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 TERB1Q8NA31 727 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 OR52E4Q8NGH9 312 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 LKAAEAR1Q8TD35 194 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 DIS3LQ8TF46 1054 aaKnown RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 USP7Q93009 1102 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 ESAMQ96AP7 390 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 SDCCAG3Q96C92 435 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 ECHDC3Q96DC8 303 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 SCRN2Q96FV2 425 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 RDH12Q96NR8 316 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 MCCC1Q96RQ3 725 aaPredicted RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 SLC22A12Q96S37 553 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 COPS8Q99627 209 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 BOCQ9BWV1 1114 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms