RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CDH13P55290 713 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 LGALS3BPQ08380 585 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 PPIGQ13427 754 aaKnown RBP eCLIP4.15□□□□□ -1.752e-7■□□□□ 11.3
SCFD1-221ENST00000556534 MDH1BQ5I0G3 518 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 NOTCH2NLQ7Z3S9 236 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 ZNF554Q86TJ5 538 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 OR1J1Q8NGS3 322 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 FGFBP3Q8TAT2 258 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 HSD17B8Q92506 261 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 DGAT2Q96PD7 388 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 GCNAQ96QF7 691 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 RTP3Q9BQQ7 232 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 NUDT16L1Q9BRJ7 211 aaKnown RBP4.15□□□□□ -1.75
SCFD1-221ENST00000556534 TRAF4Q9BUZ4 470 aaPredicted RBP4.15□□□□□ -1.75
SCFD1-221ENST00000556534 SLC35C2Q9NQQ7 365 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 GDE1Q9NZC3 331 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 CPSF2Q9P2I0 782 aaKnown RBP4.15□□□□□ -1.75
SCFD1-221ENST00000556534 ZHX1Q9UKY1 873 aaPredicted RBP4.15□□□□□ -1.75
SCFD1-221ENST00000556534 MTUS1Q9ULD2 1270 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 RABGAP1Q9Y3P9 1069 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 NME7Q9Y5B8 376 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 KAT6BQ8WYB5 2073 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 PLOD2O00469 737 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 SH2B2O14492 632 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-221ENST00000556534 CAVIN2O95810 425 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 CLPTM1O96005 669 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 APOHP02749 345 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-221ENST00000556534 OR2T7P0C7T2 308 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 CHRNB4P30926 498 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 B3GALT5-AS1P59052 145 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 HNRNPKP61978 463 aaKnown RBP eCLIP4.14□□□□□ -1.75
SCFD1-221ENST00000556534 DMPKQ09013 629 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 BECN1Q14457 450 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 P2RY6Q15077 328 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 CCDC6Q16204 474 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 KIAA1644Q3SXP7 199 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 RNASEH2BQ5TBB1 312 aaKnown RBP4.14□□□□□ -1.75
SCFD1-221ENST00000556534 GARNL3Q5VVW2 1013 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 SH2D5Q6ZV89 423 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 TMEM173Q86WV6 379 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-221ENST00000556534 ZNF383Q8NA42 475 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 OR5M8Q8NGP6 311 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 OR13J1Q8NGT2 312 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 KLHL4Q9C0H6 718 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 A4GALTQ9NPC4 353 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 EQTNQ9NQ60 294 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 ECHDC1Q9NTX5 307 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 ZNF701Q9NV72 531 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-221ENST00000556534 SWAP70Q9UH65 585 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 KCNJ14Q9UNX9 436 aa4.14□□□□□ -1.75
SCFD1-221ENST00000556534 MAGED1Q9Y5V3 778 aaPredicted RBP4.14□□□□□ -1.75
SCFD1-221ENST00000556534 IGLV9-49A0A0B4J1Y8 123 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 IGHV4-61A0A0C4DH41 118 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 NGFP01138 241 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 IGHV4-59P01825 116 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 DNASE1P24855 282 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 SLC6A6P31641 620 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 TPD52P55327 224 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-221ENST00000556534 IFI35P80217 286 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-221ENST00000556534 BMP2KLQ5H9B9 411 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 DCAF10Q5QP82 559 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 C16orf54Q6UWD8 224 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 DNAJC22Q8N4W6 341 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 SYT2Q8N9I0 419 aaPredicted RBP4.13□□□□□ -1.75
SCFD1-221ENST00000556534 WDSUB1Q8N9V3 476 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 PPFIBP2Q8ND30 876 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 CFAP61Q8NHU2 1237 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 LRR1Q96L50 414 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 LAT2Q9GZY6 243 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 PPIEQ9UNP9 301 aaKnown RBP4.13□□□□□ -1.75
SCFD1-221ENST00000556534 FAM169AQ9Y6X4 670 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 STK36Q9NRP7 1315 aa4.13□□□□□ -1.75
SCFD1-221ENST00000556534 A0A1W2PN81 502 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 ZNF197O14709 1029 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 ATP6V0E1O15342 81 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 TSPAN1O60635 241 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 RNASEH1O60930 286 aaKnown RBP4.12□□□□□ -1.75
SCFD1-221ENST00000556534 GAS8-AS1O95177 125 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 DANCRP0C864 163 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 EFNA1P20827 205 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-221ENST00000556534 CA4P22748 312 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 ALDH4A1P30038 563 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 MAP2K2P36507 400 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 CHRNA7P36544 502 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 PDX1P52945 283 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 GPR17Q13304 367 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 IL11RAQ14626 422 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 CBWD6Q4V339 395 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 CBWD3Q5JTY5 395 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 ARHGAP24Q8N264 748 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 EXD1Q8NHP7 514 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 CTCFLQ8NI51 663 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-221ENST00000556534 SPACA9Q96E40 222 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-221ENST00000556534 GOLPH3LQ9H4A5 285 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 Q9N2K0 584 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 ZNF71Q9NQZ8 489 aaPredicted RBP4.12□□□□□ -1.75
SCFD1-221ENST00000556534 MORF4L1Q9UBU8 362 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 LRWD1Q9UFC0 647 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 ZDHHC2Q9UIJ5 367 aa4.12□□□□□ -1.75
SCFD1-221ENST00000556534 RPS6KL1Q9Y6S9 549 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms