RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GDI1P31150 447 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 MAPK9P45984 424 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 DIO3P55073 304 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 GSTM4Q03013 218 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 CEACAM7Q14002 265 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 BCL7AQ4VC05 210 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 EGFLAMQ63HQ2 1017 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 C8orf82Q6P1X6 216 aaPredicted RBP25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 PARM1Q6UWI2 310 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 DENND4AQ7Z401 1863 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 ADGRG6Q86SQ4 1221 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 SFRP1Q8N474 314 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 ZIM2Q9NZV7 527 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 CROTQ9UKG9 612 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 DOCK8Q8NF50 2099 aa25.75■■□□□ 1.71
CCDC88C-205ENST00000553403 SLC5A10A0PJK1 596 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 SLC28A1O00337 649 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 NR5A2O00482 541 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 TRIM38O00635 465 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 INPP4BO15327 924 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 SYNCRIPO60506 623 aaKnown RBP25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 SLC6A12P48065 614 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 EMX2Q04743 252 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 SMU1Q2TAY7 513 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 SYTL3Q4VX76 610 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 TMEM220Q6QAJ8 160 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 BLOC1S3Q6QNY0 202 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 TMEM159Q96B96 161 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 RIPOR3Q96MK2 946 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 HEBP1Q9NRV9 189 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 CLEC1BQ9P126 229 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 LOC730098B7Z3J9 87 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 PLK4O00444 970 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 MMP20O60882 483 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 VHLP40337 213 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 ENPP2Q13822 863 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 FNDC5Q8NAU1 212 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 CXorf40AQ8TE69 158 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 FBXL8Q96CD0 374 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 PPP3R2Q96LZ3 170 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 TRMT61BQ9BVS5 477 aaKnown RBP25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 FADS3Q9Y5Q0 445 aa25.74■■□□□ 1.71
CCDC88C-205ENST00000553403 PSIP1O75475 530 aaKnown RBP25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 P2RY2P41231 377 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 GPR1P46091 355 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 NME5P56597 212 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 ABRAXAS2Q15018 415 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 ICE2Q659A1 982 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 P2RY13Q9BPV8 354 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 TACO1Q9BSH4 297 aaKnown RBP25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 SLC52A3Q9NQ40 469 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 RNF11Q9Y3C5 154 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 CCL27Q9Y4X3 112 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 STON1Q9Y6Q2 735 aa25.73■■□□□ 1.71
CCDC88C-205ENST00000553403 LSM1O15116 133 aaKnown RBP25.72■■□□□ 1.71
CCDC88C-205ENST00000553403 RGS14O43566 566 aa25.72■■□□□ 1.71
CCDC88C-205ENST00000553403 CLDN9O95484 217 aa25.72■■□□□ 1.71
CCDC88C-205ENST00000553403 GGTA1PQ4G0N0 100 aa25.72■■□□□ 1.71
CCDC88C-205ENST00000553403 RAET1GQ6H3X3 334 aa25.72■■□□□ 1.71
CCDC88C-205ENST00000553403 LRRC74BQ6ZQY2 392 aa25.72■■□□□ 1.71
CCDC88C-205ENST00000553403 SLC26A7Q8TE54 656 aa25.72■■□□□ 1.71
CCDC88C-205ENST00000553403 FGF14Q92915 247 aa25.72■■□□□ 1.71
CCDC88C-205ENST00000553403 TMEM202A6NGA9 273 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 E7ENX8 843 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 ARNTLO00327 626 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 NPC1O15118 1278 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 ANGPT2O15123 496 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 SLC22A3O75751 556 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 XRCC1P18887 633 aaPredicted RBP25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 EPORP19235 508 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 CAPN3P20807 821 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 SESN3P58005 492 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 NR6A1Q15406 480 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 ZNF658BQ4V348 819 aaPredicted RBP25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 PRMT9Q6P2P2 845 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 TRIM46Q7Z4K8 759 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 KBTBD6Q86V97 674 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 RETREG3Q86VR2 466 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 MAGEB10Q96LZ2 347 aaPredicted RBP25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 HOPXQ9BPY8 73 aaPredicted RBP25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 SPAG4Q9NPE6 437 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 ADA2Q9NZK5 511 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 PACSIN3Q9UKS6 424 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 LRRC42Q9Y546 428 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 MANBAO00462 879 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 IGFBP4P22692 258 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 MAP4P27816 1152 aaKnown RBP25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 MTHFRP42898 656 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 CCR3P51677 355 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 KCNK10P57789 538 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 CNTN1Q12860 1018 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 RCAN2Q14206 197 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 ZXDCQ2QGD7 858 aaPredicted RBP25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 PTCHD3Q3KNS1 767 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 PIP5KL1Q5T9C9 394 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 SLC22A15Q8IZD6 547 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 USP7Q93009 1102 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 SPDL1Q96EA4 605 aa25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 ZNF514Q96K75 400 aaPredicted RBP25.71■■□□□ 1.71
CCDC88C-205ENST00000553403 TRIM39Q9HCM9 518 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms