RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 COLEC10Q9Y6Z7 277 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 VPS13CQ709C8 3753 aa12.46□□□□□ -0.42
VPS29-211ENST00000553128 A0A1B0GTL3 188 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 MATN2O00339 956 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 PMPCBO75439 489 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 UNC5CO95185 931 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 NDST3O95803 873 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 CCDC172P0C7W6 258 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 MST1P26927 711 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 AKT1P31749 480 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 SPAM1P38567 509 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 PBX1P40424 430 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 CA7P43166 264 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 SSR1P43307 286 aaKnown RBP12.45□□□□□ -0.42
VPS29-211ENST00000553128 PPP2R5EQ16537 467 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 CFAP206Q8IYR0 622 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 C19orf47Q8N9M1 422 aaKnown RBP12.45□□□□□ -0.42
VPS29-211ENST00000553128 PHC3Q8NDX5 983 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 OR52E1Q8NGJ3 308 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 FAF2Q96CS3 445 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 FERD3LQ96RJ6 166 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 XPO4Q9C0E2 1151 aaKnown RBP12.45□□□□□ -0.42
VPS29-211ENST00000553128 SLC25A51Q9H1U9 297 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 PLA2G3Q9NZ20 509 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 ACTR10Q9NZ32 417 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 IL17CQ9P0M4 197 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 ANAPC7Q9UJX3 599 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 NEU2Q9Y3R4 380 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 AP1M2Q9Y6Q5 423 aa12.45□□□□□ -0.42
VPS29-211ENST00000553128 GLYATL1P3A0A0U1RQE8 302 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 ZSCAN9O15535 394 aaPredicted RBP12.44□□□□□ -0.42
VPS29-211ENST00000553128 MAP3K7O43318 606 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 NADKO95544 446 aaPredicted RBP12.44□□□□□ -0.42
VPS29-211ENST00000553128 MYBL1P10243 752 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 SKILP12757 684 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 MSH3P20585 1137 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 MX2P20592 715 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 NDUFS1P28331 727 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 CHRNA4P43681 627 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 MFAP5Q13361 173 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 ASIC2Q16515 512 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 LONRF2Q1L5Z9 754 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 SPESP1Q6UW49 350 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 TMEM207Q6UWW9 146 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 ISLR2Q6UXK2 745 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 RPTNQ6XPR3 784 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 FAM20CQ8IXL6 584 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 KCTD6Q8NC69 237 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.44□□□□□ -0.42
VPS29-211ENST00000553128 N4BP2L2Q92802 583 aaPredicted RBP12.44□□□□□ -0.42
VPS29-211ENST00000553128 RBM41Q96IZ5 413 aaKnown RBP12.44□□□□□ -0.42
VPS29-211ENST00000553128 SPSB2Q99619 263 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 ZNF670Q9BS34 389 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 THAP2Q9H0W7 228 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 ISCUQ9H1K1 167 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 SPG11Q96JI7 2443 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 ANKRD12Q6UB98 2062 aa12.44□□□□□ -0.42
VPS29-211ENST00000553128 ANKHD1Q8IWZ3 2542 aaKnown RBP12.43□□□□□ -0.42
VPS29-211ENST00000553128 C2orf74A8MZ97 194 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 F10P00742 488 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 CD63P08962 238 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 CAPN3P20807 821 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 TAS2R40P59535 323 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 TLE4Q04727 773 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 AP1B1Q10567 949 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 PRKG2Q13237 762 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 NKG7Q16617 165 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 CT47A1Q5JQC4 288 aaPredicted RBP12.43□□□□□ -0.42
VPS29-211ENST00000553128 IRAK1BP1Q5VVH5 260 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 NCCRP1Q6ZVX7 275 aaPredicted RBP12.43□□□□□ -0.42
VPS29-211ENST00000553128 COX15Q7KZN9 410 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 AMIGO1Q86WK6 493 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 SLC25A41Q8N5S1 370 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 AMER2Q8N7J2 671 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 PLD5Q8N7P1 536 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 OR11G2Q8NGC1 345 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 DTX3LQ8TDB6 740 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 TRIM11Q96F44 468 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 C14orf79Q96F83 325 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 OR2A14Q96R47 310 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 NDC1Q9BTX1 674 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 HGH1Q9BTY7 390 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 TFB2MQ9H5Q4 396 aaKnown RBP12.43□□□□□ -0.42
VPS29-211ENST00000553128 SOX17Q9H6I2 414 aaPredicted RBP12.43□□□□□ -0.42
VPS29-211ENST00000553128 TXLNGQ9NUQ3 528 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 SPHK1Q9NYA1 384 aa12.43□□□□□ -0.42
VPS29-211ENST00000553128 UGT2B7P16662 529 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 ALAS2P22557 587 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 PDHA2P29803 388 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 GCGRP47871 477 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 TNFSF10P50591 281 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 ARG2P78540 354 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 TUBB8Q3ZCM7 444 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 BCL7AQ4VC05 210 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 SIRPB2Q5JXA9 342 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 XKRXQ6PP77 449 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 NPNTQ6UXI9 565 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 MICALCLQ6ZW33 695 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 DTWD1Q8N5C7 304 aa12.42□□□□□ -0.42
VPS29-211ENST00000553128 FLVCR1-AS1Q8TAF5 88 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms