RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	ARFGAP3	Q9NP61	516 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	WASH6P	Q9NQA3	447 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	KLC4	Q9NSK0	619 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	POT1	Q9NUX5	634 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	WHRN	Q9P202	907 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	PDP2	Q9P2J9	529 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	CPNE7	Q9UBL6	633 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	PCM1	Q15154	2024 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	MGA	Q8IWI9	3026 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	SPTB	P11277	2137 aa		7.54	□□□□□ -1.2
SNHG1-223	ENST00000545440	MN1	Q10571	1320 aa	Predicted RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	FER1L5	A0AVI2	2057 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	PRAMEF33	A0A0G2JMD5	474 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	KLHL33	A6NCF5	533 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	AGAP14	A8MT82	685 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	PDZK1P1	A8MUH7	402 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	STX7	O15400	261 aa	Known RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	GPR39	O43194	453 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	SUSD5	O60279	629 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	PRAMEF10	O60809	474 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	XRCC1	P18887	633 aa	Predicted RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	HADHA	P40939	763 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	ETV5	P41161	510 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	ZNF140	P52738	457 aa	Predicted RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	CXADR	P78310	365 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	CFHR1	Q03591	330 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	TMEM115	Q12893	351 aa	Predicted RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	MSLN	Q13421	630 aa	Predicted RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	NFATC2	Q13469	925 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	CHRNA6	Q15825	494 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	LONRF2	Q1L5Z9	754 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	ANKRD39	Q53RE8	183 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	GPRC6A	Q5T6X5	926 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	SEL1L2	Q5TEA6	688 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	NKAIN2	Q5VXU1	208 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	KCTD11	Q693B1	232 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	ABRAXAS1	Q6UWZ7	409 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	ZNF662	Q6ZS27	426 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	TMEM26	Q6ZUK4	368 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	USP53	Q70EK8	1073 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	RBM12B	Q8IXT5	1001 aa	Known RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	LSM14A	Q8ND56	463 aa	Known RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	RCBTB1	Q8NDN9	531 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	GDAP1	Q8TB36	358 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	RTP4	Q96DX8	246 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	TTC25	Q96NG3	672 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	ALS2CR12	Q96Q35	445 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	TBL1Y	Q9BQ87	522 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	APOL2	Q9BQE5	337 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	DDA1	Q9BW61	102 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	LRRC40	Q9H9A6	602 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	LRRC4C	Q9HCJ2	640 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	PRDM8	Q9NQV8	689 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	GPATCH2	Q9NW75	528 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	PRR13	Q9NZ81	148 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	SLC23A2	Q9UGH3	650 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	DNAJC16	Q9Y2G8	782 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	SF3B6	Q9Y3B4	125 aa	Known RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	PCDHGA3	Q9Y5H0	932 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	ARL5A	Q9Y689	179 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	SMG1	Q96Q15	3661 aa	Known RBP	7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	NUP210L	Q5VU65	1888 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	ATRX	P46100	2492 aa		7.53	□□□□□ -1.2
SNHG1-223	ENST00000545440	TCRBV7S2A1N4T	A0A589	114 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	TLDC2	A0PJX2	215 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	ERI2	A8K979	691 aa	Known RBP	7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440		B4E171	279 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440		H7C0S8	307 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	BUD23	O43709	281 aa	Known RBP	7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	SRP72	O76094	671 aa	Known RBP	7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	AP2A1	O95782	977 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	VIP	P01282	170 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	CCDC175	P0C221	793 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	ANKRD34C	P0C6C1	535 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	BRAF	P15056	766 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	ITGAL	P20701	1170 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	IDS	P22304	550 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	AKT1	P31749	480 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	CSTF2	P33240	577 aa	Known RBP eCLIP	7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	TSPAN7	P41732	249 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	CAPZB	P47756	277 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	CTSC	P53634	463 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	MAPK10	P53779	464 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	RHD	Q02161	417 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	OLIG2	Q13516	323 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	SEPT7	Q16181	437 aa	Known RBP	7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	PARP6	Q2NL67	630 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	BCL7A	Q4VC05	210 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	SOWAHC	Q53LP3	525 aa	Predicted RBP	7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	DENND5A	Q6IQ26	1287 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	AMZ2	Q86W34	360 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	TRIM48	Q8IWZ4	208 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	RASGEF1A	Q8N9B8	481 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	FAM71D	Q8N9W8	422 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	OR4K2	Q8NGD2	314 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	ZNF398	Q8TD17	642 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	USP7	Q93009	1102 aa		7.52	□□□□□ -1.21
SNHG1-223	ENST00000545440	ULK4	Q96C45	1275 aa		7.52	□□□□□ -1.21

Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms