RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 MAPK9P45984 424 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 POLE2P56282 527 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 AP1S2P56377 157 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 DCDC1P59894 354 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 RPL38P63173 70 aaKnown RBP11.74□□□□□ -0.53
NUP54-202ENST00000502850 TUBA4AP68366 448 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 ZNF33BQ06732 778 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 ABRAXAS2Q15018 415 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 ATP6AP1Q15904 470 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 RABL3Q5HYI8 236 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 SPRED1Q7Z699 444 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 AMIGO2Q86SJ2 522 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 HS6ST3Q8IZP7 471 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 GPR26Q8NDV2 337 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 SLC13A3Q8WWT9 602 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 USP7Q93009 1102 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 TIFAQ96CG3 184 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 VWCEQ96DN2 955 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 RMND5BQ96G75 393 aaPredicted RBP11.74□□□□□ -0.53
NUP54-202ENST00000502850 PRPF18Q99633 342 aaKnown RBP11.74□□□□□ -0.53
NUP54-202ENST00000502850 BDH2Q9BUT1 245 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 DPY30Q9C005 99 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 ZDHHC6Q9H6R6 413 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 LRTM1Q9HBL6 345 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 IL23AQ9NPF7 189 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 ELOVL2Q9NXB9 296 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 TBC1D14Q9P2M4 693 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 NFKBIL1Q9UBC1 381 aaPredicted RBP11.74□□□□□ -0.53
NUP54-202ENST00000502850 SNX6Q9UNH7 406 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 SLC8A2Q9UPR5 921 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 DMTF1Q9Y222 760 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 TMED5Q9Y3A6 229 aa11.74□□□□□ -0.53
NUP54-202ENST00000502850 PIKFYVEQ9Y2I7 2098 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 MTCL1Q9Y4B5 1905 aaKnown RBP11.73□□□□□ -0.53
NUP54-202ENST00000502850 MYO9BQ13459 2157 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 A0A0U1RQS6 177 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 TCRBV5S2A0A599 114 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 C7orf72A4D263 438 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 ENO4A6NNW6 628 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 MANBAO00462 879 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 ANKRD28O15084 1053 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 RASAL1O95294 804 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 FGBP02675 491 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 SPATA31D3P0C874 917 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 PRPS2P11908 318 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 PABPC1P11940 636 aaKnown RBP11.73□□□□□ -0.53
NUP54-202ENST00000502850 IL12AP29459 219 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 HLA-FP30511 346 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 GKP32189 559 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 GRIA2P42262 883 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 SPINT3P49223 89 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 RPIAP49247 311 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 CCT8P50990 548 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 KCNC3Q14003 757 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 GBX1Q14549 363 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 PHKG1Q16816 387 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 FUT11Q495W5 492 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 PSRC1Q6PGN9 363 aaPredicted RBP11.73□□□□□ -0.53
NUP54-202ENST00000502850 GDPD4Q6W3E5 623 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 SPATA31D4Q6ZUB0 917 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 TSPAN33Q86UF1 283 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 IFNEQ86WN2 208 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 ZSWIM9Q86XI8 627 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 CMTM8Q8IZV2 173 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 DCBLD1Q8N8Z6 715 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 OTUB2Q96DC9 234 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 CDX2Q99626 313 aaPredicted RBP11.73□□□□□ -0.53
NUP54-202ENST00000502850 CORO1BQ9BR76 489 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 SLC12A9Q9BXP2 914 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 TTYH1Q9H313 450 aaPredicted RBP11.73□□□□□ -0.53
NUP54-202ENST00000502850 ACTR8Q9H981 624 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 PARVBQ9HBI1 364 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 C1orf109Q9NX04 203 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 ARL15Q9NXU5 204 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 TUBA8Q9NY65 449 aaPredicted RBP11.73□□□□□ -0.53
NUP54-202ENST00000502850 KLQ9UEF7 1012 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 TSR3Q9UJK0 312 aaKnown RBP11.73□□□□□ -0.53
NUP54-202ENST00000502850 ZNF490Q9ULM2 529 aaPredicted RBP11.73□□□□□ -0.53
NUP54-202ENST00000502850 CCL27Q9Y4X3 112 aa11.73□□□□□ -0.53
NUP54-202ENST00000502850 LAMA2P24043 3122 aaKnown RBP11.73□□□□□ -0.53
NUP54-202ENST00000502850 TMEM265A0A087WTH1 108 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 RNF103-CHMP3A0A140T963 221 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 SAC3D1A6NKF1 404 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 NPIPB8E9PQR5 432 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 DEAF1O75398 565 aaPredicted RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 RSL1D1O76021 490 aaKnown RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 CXCL14O95715 111 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 FTH1P02794 183 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 ANXA6P08133 673 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 PRPH2P23942 346 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 AOAHP28039 575 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 VIPR1P32241 457 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 NNMTP40261 264 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 STK19P49842 368 aaPredicted RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 EPHA5P54756 1037 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 PLOD1Q02809 727 aaPredicted RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 KCTD21Q4G0X4 260 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 FAM98BQ52LJ0 330 aaKnown RBP11.72□□□□□ -0.53
NUP54-202ENST00000502850 NHSL2Q5HYW2 709 aa11.72□□□□□ -0.53
NUP54-202ENST00000502850 FAM219BQ5XKK7 198 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms