RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 COLEC10Q9Y6Z7 277 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 TRGV8A0A0C4DH27 118 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 LRRC53A6NM62 1247 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 C19orf84I3L1E1 186 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 CCL21O00585 134 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 GAPDHSO14556 408 aaPredicted RBP15.9■□□□□ 0.14
VIM-208ENST00000497849 OR2B3O76000 313 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 MT-CYBP00156 380 aaPredicted RBP15.9■□□□□ 0.14
VIM-208ENST00000497849 SLC35G4P0C7Q5 338 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 MYBL1P10243 752 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 SSTR2P30874 369 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 PPIDQ08752 370 aaKnown RBP15.9■□□□□ 0.14
VIM-208ENST00000497849 DEFB110Q30KQ9 67 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 E4F1Q66K89 784 aaPredicted RBP15.9■□□□□ 0.14
VIM-208ENST00000497849 FAM151BQ6UXP7 276 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 CDH24Q86UP0 819 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 NT5DC3Q86UY8 548 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 ACVR1CQ8NER5 493 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 OR2L2Q8NH16 312 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 LCN9Q8WX39 176 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 NR4A3Q92570 626 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 NACC2Q96BF6 587 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 ZNF670Q9BS34 389 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 AP1M1Q9BXS5 423 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 EPS8L2Q9H6S3 715 aa15.9■□□□□ 0.14
VIM-208ENST00000497849 SOCS6O14544 535 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 MAP3K7O43318 606 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 NDST3O95803 873 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 GYPCP04921 128 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 POLBP06746 335 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 HOXB4P17483 251 aaPredicted RBP15.89■□□□□ 0.13
VIM-208ENST00000497849 MMP11P24347 488 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 DEKP35659 375 aaKnown RBP15.89■□□□□ 0.13
VIM-208ENST00000497849 SPAM1P38567 509 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 NOMO1Q15155 1222 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 NKAIN1Q4KMZ8 207 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 RPTNQ6XPR3 784 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 DET1Q7L5Y6 550 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 SPATA22Q8NHS9 363 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 FAF2Q96CS3 445 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 TRIM11Q96F44 468 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 SRPK1Q96SB4 655 aaKnown RBP15.89■□□□□ 0.13
VIM-208ENST00000497849 ISCUQ9H1K1 167 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 SLC25A51Q9H1U9 297 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 DEF6Q9H4E7 631 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 IL17CQ9P0M4 197 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 MYO6Q9UM54 1294 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 CAPN11Q9UMQ6 739 aa15.89■□□□□ 0.13
VIM-208ENST00000497849 SNRNP200O75643 2136 aaKnown RBP15.89■□□□□ 0.13
VIM-208ENST00000497849 FBN3Q75N90 2809 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 ZNF469Q96JG9 3925 aaPredicted RBP15.88■□□□□ 0.13
VIM-208ENST00000497849 KCNN4O15554 427 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 KLHL18O94889 574 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 SKILP12757 684 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 CAPN3P20807 821 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 CA7P43166 264 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 Q0VFX4 171 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 KRT33BQ14525 404 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 ZIC1Q15915 447 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 PPP2R5EQ16537 467 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 LONRF2Q1L5Z9 754 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 FIGNQ5HY92 759 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 KIRREL2Q6UWL6 708 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 GFRALQ6UXV0 394 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 LINC00696Q6ZRV3 163 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 DAAM2Q86T65 1068 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 CPNE8Q86YQ8 564 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 ADGRF3Q8IZF5 1079 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.88■□□□□ 0.133e-7■■■■■ 36.2
VIM-208ENST00000497849 OR1N1Q8NGS0 311 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 MRFAP1L1Q96HT8 127 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 LHPPQ9H008 270 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 IP6K2Q9UHH9 426 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.88■□□□□ 0.13
VIM-208ENST00000497849 HS3ST3B1Q9Y662 390 aa15.88■□□□□ 0.13
VIM-208ENST00000497849 GLYATL1P3A0A0U1RQE8 302 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 ZSCAN9O15535 394 aaPredicted RBP15.87■□□□□ 0.13
VIM-208ENST00000497849 SGTAO43765 313 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 TBX2Q13207 712 aaPredicted RBP15.87■□□□□ 0.13
VIM-208ENST00000497849 MFAP5Q13361 173 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 CDSNQ15517 529 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 SLC14A2Q15849 920 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 ASIC2Q16515 512 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 IRAK1BP1Q5VVH5 260 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 ZDHHC20Q5W0Z9 365 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 ISLR2Q6UXK2 745 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 CFAP206Q8IYR0 622 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 ZNF655Q8N720 491 aaPredicted RBP15.87■□□□□ 0.13
VIM-208ENST00000497849 C19orf47Q8N9M1 422 aaKnown RBP15.87■□□□□ 0.13
VIM-208ENST00000497849 SPC24Q8NBT2 197 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 KCTD6Q8NC69 237 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 OR52E1Q8NGJ3 308 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 N4BP2L2Q92802 583 aaPredicted RBP15.87■□□□□ 0.13
VIM-208ENST00000497849 LINC00615Q96LM1 132 aaPredicted RBP15.87■□□□□ 0.13
VIM-208ENST00000497849 MAGEB10Q96LZ2 347 aaPredicted RBP15.87■□□□□ 0.13
VIM-208ENST00000497849 TFB2MQ9H5Q4 396 aaKnown RBP15.87■□□□□ 0.13
VIM-208ENST00000497849 SMOXQ9NWM0 555 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 ACTR10Q9NZ32 417 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 CDC23Q9UJX2 597 aa15.87■□□□□ 0.13
VIM-208ENST00000497849 ANAPC7Q9UJX3 599 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms