RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 GAGE5Q13069 117 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 GAGE6Q13070 117 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 KLHL26Q53HC5 615 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 GRTP1Q5TC63 336 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 FAM171BQ6P995 826 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 DCLRE1AQ6PJP8 1040 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 PLXDC2Q6UX71 529 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 RAD9BQ6WBX8 426 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 PPP1R21Q6ZMI0 780 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 TUBA1AQ71U36 451 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 CCAR2Q8N163 923 aaKnown RBP3.82□□□□□ -1.8
SMC4-225ENST00000497203 ZNF441Q8N8Z8 693 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 L3MBTL4Q8NA19 623 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 SLC4A11Q8NBS3 891 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 ZFAND2BQ8WV99 257 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 DAZLQ92904 295 aaKnown RBP3.82□□□□□ -1.8
SMC4-225ENST00000497203 EXT2Q93063 718 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 SPSB1Q96BD6 273 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 MOB3AQ96BX8 217 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 IGSF21Q96ID5 467 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 LMLNQ96KR4 655 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 TUBA1CQ9BQE3 449 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 MGME1Q9BQP7 344 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 LRRC1Q9BTT6 524 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 THUMPD3Q9BV44 507 aaKnown RBP3.82□□□□□ -1.8
SMC4-225ENST00000497203 CSTL1Q9H114 145 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 TRPC7Q9HCX4 862 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 MRGBPQ9NV56 204 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 RALYQ9UKM9 306 aaKnown RBP3.82□□□□□ -1.8
SMC4-225ENST00000497203 ABT1Q9ULW3 272 aaKnown RBP3.82□□□□□ -1.8
SMC4-225ENST00000497203 PADI2Q9Y2J8 665 aa3.82□□□□□ -1.8
SMC4-225ENST00000497203 TRAV34A0A0B4J273 112 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 A0A1W2PPQ1 181 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 PLSCR5A0PG75 271 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 HYKKA2RU49 373 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 PTGESO14684 152 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 SYNGR3O43761 229 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 OR10H2O60403 315 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 SYNCRIPO60506 623 aaKnown RBP3.81□□□□□ -1.8
SMC4-225ENST00000497203 ATP5BP06576 529 aaKnown RBP3.81□□□□□ -1.8
SMC4-225ENST00000497203 CKMT2P17540 419 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 CBLP22681 906 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 CDC25CP30307 473 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 COPB2P35606 906 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 PITX1P78337 314 aaPredicted RBP3.81□□□□□ -1.8
SMC4-225ENST00000497203 PNRC1Q12796 327 aaPredicted RBP3.81□□□□□ -1.8
SMC4-225ENST00000497203 MFAP5Q13361 173 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 MDH1BQ5I0G3 518 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 MFSD12Q6NUT3 480 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 TRAT1Q6PIZ9 186 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 MOXD1Q6UVY6 613 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 SUSD1Q6UWL2 747 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 C11orf57Q6ZUT1 292 aaPredicted RBP3.81□□□□□ -1.8
SMC4-225ENST00000497203 COMMD2Q86X83 199 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 CPSF7Q8N684 471 aaKnown RBP3.81□□□□□ -1.8
SMC4-225ENST00000497203 METTL27Q8N6F8 245 aaPredicted RBP3.81□□□□□ -1.8
SMC4-225ENST00000497203 ZNF611Q8N823 705 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 OR5M8Q8NGP6 311 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 GOT1L1Q8NHS2 421 aaPredicted RBP3.81□□□□□ -1.8
SMC4-225ENST00000497203 CCDC107Q8WV48 283 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 SECTM1Q8WVN6 248 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 ERO1AQ96HE7 468 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 SGK494Q96LW2 274 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 IL17FQ96PD4 163 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 FEVQ99581 238 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 OSER1Q9NX31 292 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 ZNF112Q9UJU3 913 aa3.81□□□□□ -1.8
SMC4-225ENST00000497203 FLT1P17948 1338 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 A0A087WV48 116 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 TEX13DA0A0J9YY54 714 aaPredicted RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 FEZF1A0PJY2 475 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 DENND3A2RUS2 1198 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 CTAGE9A4FU28 777 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 EME2A4GXA9 379 aaPredicted RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 NEMP2A6NFY4 417 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 SIX3O95343 332 aaPredicted RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 CTAGE8P0CG41 777 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 HOXC13P31276 330 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 HOXA1P49639 335 aaPredicted RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 TPD52P55327 224 aaPredicted RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 HNRNPKP61978 463 aaKnown RBP eCLIP3.8□□□□□ -1.8
SMC4-225ENST00000497203 RPL24P83731 157 aaKnown RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 EEF1A2Q05639 463 aaKnown RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 COASYQ13057 564 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 C6orf136Q5SQH8 315 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 PDSS1Q5T2R2 415 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 CAVIN1Q6NZI2 390 aaKnown RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 MSANTD1Q6ZTZ1 278 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 DNAJB7Q7Z6W7 309 aaPredicted RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 TLK2Q86UE8 772 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 EXOC3L1Q86VI1 746 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 FAM114A1Q8IWE2 563 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 CTAGE4Q8IX94 777 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 CEP57L1Q8IYX8 460 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 RNF128Q8TEB7 428 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 SYN2Q92777 582 aaPredicted RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 VMP1Q96GC9 406 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 JAKMIP1Q96N16 626 aaKnown RBP3.8□□□□□ -1.8
SMC4-225ENST00000497203 MUS81Q96NY9 551 aa3.8□□□□□ -1.8
SMC4-225ENST00000497203 POLR3CQ9BUI4 534 aaPredicted RBP3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms