RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PRKCHP24723 683 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 DNAJB1P25685 340 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 TIE1P35590 1138 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 MBLAC2Q68D91 279 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 USP30Q70CQ3 517 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 KCTD13Q8WZ19 329 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 DUSP26Q9BV47 211 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 MED1Q15648 1581 aaPredicted RBP16.17■□□□□ 0.18
COL7A1-210ENST00000487017 SLC38A8A6NNN8 435 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 EFCAB9A8MZ26 197 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 PRNPP04156 253 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 KELP23276 732 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 FMO3P31513 532 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 MXD1Q05195 221 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 PDSS2Q86YH6 399 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 SLC9A6Q92581 669 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 PPP1R14BQ96C90 147 aa16.17■□□□□ 0.18
COL7A1-210ENST00000487017 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.17■□□□□ 0.18
COL7A1-210ENST00000487017 FFAR2O15552 330 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 HSPB3Q12988 150 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 SNX20Q7Z614 316 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 JAZF1Q86VZ6 243 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 RIIAD1A6NNX1 92 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 TMEM233B4DJY2 109 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 SLC22A1O15245 554 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 ECI2O75521 394 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 DNTTP04053 509 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 FOXM1Q08050 763 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 SNAP47Q5SQN1 464 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 GPR153Q6NV75 609 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 TRPV3Q8NET8 790 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 DNASE1L2Q92874 299 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 TMCO6Q96DC7 493 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 ART5Q96L15 291 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 PKP2Q99959 881 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 BHLHE41Q9C0J9 482 aaPredicted RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 CCDC59Q9P031 241 aaKnown RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 SIX3O95343 332 aaPredicted RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 RLN1P04808 185 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 S100A9P06702 114 aaKnown RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 POMZP3Q6PJE2 187 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 C2orf15Q8WU43 125 aaKnown RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 FUBP3Q96I24 572 aaKnown RBP eCLIP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 CDK15Q96Q40 435 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF304Q9HCX3 659 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 ZIM2Q9NZV7 527 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 F7P08709 466 aaPredicted RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 EFNA1P20827 205 aaPredicted RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 IDSP22304 550 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 TIGD5Q53EQ6 642 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 STX12Q86Y82 276 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF563Q8TA94 476 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 PLEKHO2Q8TD55 490 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 PIGKQ92643 395 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 PIWIL1Q96J94 861 aaKnown RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF599Q96NL3 588 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 GPR22Q99680 433 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 NECTIN3Q9NQS3 549 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 PRKAB1Q9Y478 270 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 PDLIM1O00151 329 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 CYP11A1P05108 521 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 MNDAP41218 407 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 CAMK1Q14012 370 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 HEPACAMQ14CZ8 416 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 ATXN7L2Q5T6C5 722 aaPredicted RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 PDE12Q6L8Q7 609 aaKnown RBP16.16■□□□□ 0.18
COL7A1-210ENST00000487017 PHTF2Q8N3S3 785 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 MINDY2Q8NBR6 621 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 FRMD6Q96NE9 622 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 MED28Q9H204 178 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 DSN1Q9H410 356 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 CALML5Q9NZT1 146 aa16.16■□□□□ 0.18
COL7A1-210ENST00000487017 LMO7Q8WWI1 1683 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 PARP4Q9UKK3 1724 aaKnown RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 ARFIP1P53367 373 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 NFKB2Q00653 900 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 PJA1Q8NG27 643 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 ZBTB26Q9HCK0 441 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 A0A0G2JLL6 359 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 AHSGP02765 367 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 HSF2Q03933 536 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 PCLAFQ15004 111 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 SUZ12Q15022 739 aaKnown RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 ATP13A5Q4VNC0 1218 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 MSANTD2Q6P1R3 559 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 PRRT2Q7Z6L0 340 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 ENPP3O14638 875 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 ITPKBP27987 946 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 SCRN3Q0VDG4 424 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 SLC35F5Q8WV83 523 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 DDX1Q92499 740 aaKnown RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 KCNN2Q9H2S1 579 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 DEC1Q9P2X7 70 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 DKK3Q9UBP4 350 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 MRTO4Q9UKD2 239 aaKnown RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 LRRC42Q9Y546 428 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D3DA0A087WVF3 549 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D3IA0A087WXS9 549 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D3EA0A087X179 549 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D3KA0A087X1G2 549 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms