RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ASB11Q8WXH4 323 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 ARL8AQ96BM9 186 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 CXorf40BQ96DE9 158 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 SCYL1Q96KG9 808 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 SMC6Q96SB8 1091 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 SH3GL2Q99962 352 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 ZNF358Q9NW07 568 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 ZNF624Q9P2J8 865 aaPredicted RBP11.94□□□□□ -0.5
SDC1-206ENST00000482879 DCDC2Q9UHG0 476 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 IKZF3Q9UKT9 509 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 PCDHGB2Q9Y5G2 931 aa11.94□□□□□ -0.5
SDC1-206ENST00000482879 PCNX2A6NKB5 2137 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 LAMA1P25391 3075 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 NPEPPSL1A6NEC2 478 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 C4orf47A7E2U8 309 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 GFYI3L273 518 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 COPEO14579 308 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 SLC16A5O15375 505 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 NOBOXO60393 691 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 SPAG7O75391 227 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 PSIP1O75475 530 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 C1orf105O95561 183 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 TOP3BO95985 862 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 VIPP01282 170 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 CATP04040 527 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 RPN2P04844 631 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 C8GP07360 202 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 GSTA1P08263 222 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 XRCC1P18887 633 aaPredicted RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 TFEBP19484 476 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 MAP4P27816 1152 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 BDKRB1P46663 353 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 GLRBP48167 497 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 CCT5P48643 541 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 MAZP56270 477 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 ACAP2Q15057 778 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 TSNQ15631 228 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 TSNAXIP1Q2TAA8 658 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 DUS1LQ6P1R4 473 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 TTC23LQ6PF05 361 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 UBE2R2Q712K3 238 aaPredicted RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 SLC9B2Q86UD5 537 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 TBC1D21Q8IYX1 336 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 SFRP1Q8N474 314 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 ARL14Q8N4G2 192 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 KYQ8NBH2 561 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 GPR156Q8NFN8 814 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 OR5AR1Q8NGP9 310 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 MAPK15Q8TD08 544 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 SLC37A2Q8TED4 501 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 KIAA1191Q96A73 305 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 PKNOX2Q96KN3 472 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 GPR78Q96P69 363 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 TRIT1Q9H3H1 467 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 TFB2MQ9H5Q4 396 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 ALG9Q9H6U8 611 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 MVB12BQ9H7P6 319 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 CPNE7Q9UBL6 633 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 ADAMTS6Q9UKP5 1117 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 TDRKHQ9Y2W6 561 aaKnown RBP11.93□□□□□ -0.5
SDC1-206ENST00000482879 COLEC10Q9Y6Z7 277 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 WDR87Q6ZQQ6 2873 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 MYO15AQ9UKN7 3530 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 DMDP11532 3685 aa11.93□□□□□ -0.5
SDC1-206ENST00000482879 PRAMEF33A0A0G2JMD5 474 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 ARHGEF33A8MVX0 844 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 SIGLEC6O43699 453 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 GLRA3O75311 464 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 RBP1P09455 135 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 CREB1P16220 341 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 CYP2A7P20853 494 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 NDUFS1P28331 727 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 CRHR1P34998 444 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 KPNA2P52292 529 aaKnown RBP11.92□□□□□ -0.5
SDC1-206ENST00000482879 MAGOHP61326 146 aaKnown RBP11.92□□□□□ -0.5
SDC1-206ENST00000482879 UBE2IP63279 158 aaKnown RBP11.92□□□□□ -0.5
SDC1-206ENST00000482879 PRKG2Q13237 762 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 SLC14A1Q13336 389 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 SP140Q13342 867 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 BIRC2Q13490 618 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 OR4D1Q15615 310 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 INAVAQ3KP66 663 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 C14orf28Q4W4Y0 310 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 ZCCHC8Q6NZY4 707 aaKnown RBP11.92□□□□□ -0.5
SDC1-206ENST00000482879 C16orf46Q6P387 395 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 DBX2Q6ZNG2 339 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 ADAMTSL2Q86TH1 951 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 ISCA2Q86U28 154 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 LCA5Q86VQ0 697 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 C17orf82Q86X59 251 aaPredicted RBP11.92□□□□□ -0.5
SDC1-206ENST00000482879 RASGRP3Q8IV61 690 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 SLC35F3Q8IY50 421 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 ARL10Q8N8L6 244 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 BANPQ8N9N5 519 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 AVL9Q8NBF6 648 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 OR5K2Q8NHB8 316 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 STAG3L4Q8TBR4 150 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 MAGEC3Q8TD91 643 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 MCOLN3Q8TDD5 553 aa11.92□□□□□ -0.5
SDC1-206ENST00000482879 SETD7Q8WTS6 366 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms