RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ZNF614Q8N883 585 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 OR1J2Q8NGS2 313 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 HM13Q8TCT9 377 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 GMPPAQ96IJ6 420 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 NUDCD1Q96RS6 583 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 PAFAH2Q99487 392 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 C1QTNF1Q9BXJ1 281 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 TEX12Q9BXU0 123 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 RAD21L1Q9H4I0 556 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 MAGIXQ9H6Y5 334 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 EPB41L5Q9HCM4 733 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 PLCXD1Q9NUJ7 323 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 GIMAP4Q9NUV9 329 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 ARHGEF38Q9NXL2 777 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 MRPL15Q9P015 296 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 CHORDC1Q9UHD1 332 aaPredicted RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 PLAGL1Q9UM63 463 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 EXO1Q9UQ84 846 aaKnown RBP2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 STK36Q9NRP7 1315 aa2.83□□□□□ -1.96
CCDC88A-212ENST00000474059 KANSL1LA0AUZ9 987 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 LRRC72A6NJI9 287 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 SLCO1B7G3V0H7 640 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 SMAD9O15198 467 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 KCNN4O15554 427 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 EIF5BO60841 1220 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 FAM157CP0CG43 387 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 MMP9P14780 707 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 TRIM21P19474 475 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 MCCP23508 829 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 PNLIPRP2P54317 469 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 KCNC3Q14003 757 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 IGSF11Q5DX21 431 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 GARNL3Q5VVW2 1013 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 ALS2CLQ60I27 953 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 GPR139Q6DWJ6 353 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 PWWP2BQ6NUJ5 590 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 PACS1Q6VY07 963 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 ARID3BQ8IVW6 561 aaPredicted RBP2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 TMTC2Q8N394 836 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 PRPF31Q8WWY3 499 aaKnown RBP2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 GCNAQ96QF7 691 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 OSGEPL1Q9H4B0 414 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 UBA2Q9UBT2 640 aaPredicted RBP2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 MORF4L1Q9UBU8 362 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 STK39Q9UEW8 545 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 MAGED1Q9Y5V3 778 aaPredicted RBP2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 FLT1P17948 1338 aa2.82□□□□□ -1.96
CCDC88A-212ENST00000474059 A0A0G2JNG1 304 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 SYNDIG1LA6NDD5 238 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 GLOD5A6NK44 160 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 TMEM178BH3BS89 294 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 MAP2K7O14733 419 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 PLPP2O43688 288 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 CLPTM1O96005 669 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 STAT2P52630 851 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 TRA2BP62995 288 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 KIR2DS5Q14953 304 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 GLIPR1L2Q4G1C9 344 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 RAB6CQ53S08 254 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 KRT79Q5XKE5 535 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 LCN10Q6JVE6 187 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 NAA16Q6N069 864 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 DOK6Q6PKX4 331 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 KRT74Q7RTS7 529 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 ADGRA1Q86SQ6 560 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 DNAAF5Q86Y56 855 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 RASGEF1CQ8N431 466 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 APPL2Q8NEU8 664 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 UTP15Q8TED0 518 aaKnown RBP2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 MOAP1Q96BY2 351 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 ABHD1Q96SE0 405 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 SLX1AQ9BQ83 275 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 KIFC3Q9BVG8 833 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 KLHL4Q9C0H6 718 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 LAT2Q9GZY6 243 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 RAB6CQ9H0N0 254 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 FAM169AQ9Y6X4 670 aa2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 ZNF644Q9H582 1327 aaPredicted RBP2.81□□□□□ -1.96
CCDC88A-212ENST00000474059 LOC102723996A0A087X1L8 192 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 LNP1A1A4G5 178 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 EIF4E1BA6NMX2 242 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 ANKRD28O15084 1053 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 AVILO75366 819 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 RSL1D1O76021 490 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 TRIM49P0CI25 452 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 TRIM49CP0CI26 452 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 DUX4L4P0CJ87 422 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 PRLRP16471 622 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 UGT1A1P22309 533 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 WNT5AP41221 380 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 TMF1P82094 1093 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 PPP2R2BQ00005 443 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 CALD1Q05682 793 aaKnown RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 CXCL9Q07325 125 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 GRAPQ13588 217 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 BAATQ14032 418 aaPredicted RBP2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 RASA2Q15283 850 aa2.8□□□□□ -1.96
CCDC88A-212ENST00000474059 C15orf59Q2T9L4 293 aaPredicted RBP2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms