RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 THAP4Q8WY91 577 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 ATG4AQ8WYN0 398 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 C12orf66Q96MD2 445 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 RUNDC3BQ96NL0 473 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 RANBP9Q96S59 729 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 GPR87Q9BY21 358 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 C10orf88Q9H8K7 445 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 L2HGDHQ9H9P8 463 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 IL17CQ9P0M4 197 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 SLC24A2Q9UI40 661 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 SVILO95425 2214 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 POLEQ07864 2286 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 ABCA12Q86UK0 2595 aa12.55□□□□□ -0.4
LINC00339-202ENST00000416769 MEN1O00255 615 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 HCRTR1O43613 425 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 SGTAO43765 313 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 TMEM63AO94886 807 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 POLBP06746 335 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 CTSBP07858 339 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 POLR2CP19387 275 aaPredicted RBP12.54□□□□□ -0.4
LINC00339-202ENST00000416769 HMGCLP35914 325 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 SPAM1P38567 509 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 KCNJ1P48048 391 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 LMAN1P49257 510 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 NR6A1Q15406 480 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 DSELQ8IZU8 1212 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 DDHD1Q8NEL9 900 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 BLOC1S5Q8TDH9 187 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 GRK7Q8WTQ7 553 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 MRGPRX2Q96LB1 330 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 GORASP1Q9BQQ3 440 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 TMEM121Q9BTD3 319 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 RAD18Q9NS91 495 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 PCMTD2Q9NV79 361 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 SOHLH2Q9NX45 425 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 PCYOX1Q9UHG3 505 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 TRHDEQ9UKU6 1024 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 TCFL5Q9UL49 500 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 SNX7Q9UNH6 387 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 LRBAP50851 2863 aa12.54□□□□□ -0.4
LINC00339-202ENST00000416769 GLYATL1P3A0A0U1RQE8 302 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 LOC285095A0A1B0GVY8 99 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 CTAGE15A4D2H0 777 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 C5orf60A6NFR6 353 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 TMEM150CB9EJG8 249 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 KCNN4O15554 427 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 LDLRP01130 860 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 CTAGE8P0CG41 777 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 VCLP18206 1134 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 LPOP22079 712 aaPredicted RBP12.53□□□□□ -0.4
LINC00339-202ENST00000416769 PLEKHN1Q494U1 663 aaPredicted RBP12.53□□□□□ -0.4
LINC00339-202ENST00000416769 IZUMO3Q5VZ72 239 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 METRNLQ641Q3 311 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 TTC27Q6P3X3 843 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 CTAGE6Q86UF2 777 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 OOSP2Q86WS3 158 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 CTAGE4Q8IX94 777 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 IPMKQ8NFU5 416 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 OR4E2Q8NGC2 313 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 INPP5DQ92835 1189 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 SNRNP40Q96DI7 357 aaKnown RBP12.53□□□□□ -0.4
LINC00339-202ENST00000416769 TEKT5Q96M29 485 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 TTC25Q96NG3 672 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 FCRL4Q96PJ5 515 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 ASF1BQ9NVP2 202 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 HAUS2Q9NVX0 235 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 BTRCQ9Y297 605 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 ARL5AQ9Y689 179 aa12.53□□□□□ -0.4
LINC00339-202ENST00000416769 CSMD1Q96PZ7 3565 aa12.52□□□□□ -0.4
LINC00339-202ENST00000416769 BTN3A3O00478 584 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 CCL22O00626 93 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 STK10O94804 968 aaKnown RBP12.52□□□□□ -0.41
LINC00339-202ENST00000416769 ZBTB11O95625 1053 aaPredicted RBP12.52□□□□□ -0.41
LINC00339-202ENST00000416769 ST6GAL1P15907 406 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 AKT1P31749 480 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 P3H1Q32P28 736 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 ANKRD20A2Q5SQ80 823 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 ANKRD20A1Q5TYW2 823 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 ANKRD20A3Q5VUR7 823 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 C4orf22Q6V702 233 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 GSTA5Q7RTV2 222 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 PID1Q7Z2X4 250 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 GLT6D1Q7Z4J2 308 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 TRIM73Q86UV7 250 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 KMT5CQ86Y97 462 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 KLHL7Q8IXQ5 586 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 SYTL1Q8IYJ3 562 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 MMGT1Q8N4V1 131 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 CISD2Q8N5K1 135 aaKnown RBP12.52□□□□□ -0.41
LINC00339-202ENST00000416769 FAM71DQ8N9W8 422 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 SLCO2A1Q92959 643 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 CLIP3Q96DZ5 547 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 APOL2Q9BQE5 337 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 DDX47Q9H0S4 455 aaKnown RBP12.52□□□□□ -0.41
LINC00339-202ENST00000416769 XKR8Q9H6D3 395 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 KIR3DX1Q9H7L2 352 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 ZBTB20Q9HC78 741 aaPredicted RBP12.52□□□□□ -0.41
LINC00339-202ENST00000416769 SLAMF7Q9NQ25 335 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 FKBPLQ9UIM3 349 aa12.52□□□□□ -0.41
LINC00339-202ENST00000416769 POMT2Q9UKY4 750 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms