RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 DNAJC28Q9NX36 388 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 SIDT1Q9NXL6 827 aaKnown RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 CPNE7Q9UBL6 633 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 HAO1Q9UJM8 370 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ICKQ9UPZ9 632 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 MYO15AQ9UKN7 3530 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 IGHV1OR21-1A0A087WYE8 117 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 STX16-NPEPL1H3BU86 382 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 STX16O14662 325 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 PPM1DO15297 605 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 KERAO60938 352 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 MTHFD2P13995 350 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 PEBP1P30086 187 aaKnown RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 FMO4P31512 558 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 HNMTP50135 292 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 NAA25Q14CX7 972 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 PCBP2Q15366 365 aaKnown RBP eCLIP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 TAOK1Q7L7X3 1001 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 TAS2R42Q7RTR8 314 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 CLDN19Q8N6F1 224 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 MAGEC3Q8TD91 643 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 DLG3Q92796 817 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 PRR11Q96HE9 360 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 SLC41A2Q96JW4 573 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 GPR21Q99679 349 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF768Q9H5H4 540 aaKnown RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 SNX15Q9NRS6 342 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 SLC17A6Q9P2U8 582 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 COLEC10Q9Y6Z7 277 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 KCNE1BA0A087WTH5 132 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 B4GAT1O43505 415 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 KRT38O76015 456 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 LDOC1O95751 146 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 CCND1P24385 295 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 HRH2P25021 359 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 PDHA2P29803 388 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 CAPZBP47756 277 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 KIR2DS3Q14952 304 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 CASC4Q6P4E1 433 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 TMPRSS7Q7RTY8 843 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 LDB1Q86U70 411 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 HID1Q8IV36 788 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 BANPQ8N9N5 519 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 LMX1AQ8TE12 382 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 ANKRD49Q8WVL7 239 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 ALKBH8Q96BT7 664 aaKnown RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 L3HYPDHQ96EM0 354 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 CCDC138Q96M89 665 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 CAMK1GQ96NX5 476 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 TMEM121BQ9BXQ6 578 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 MIR1-1HGQ9H1L0 117 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 IL1RAPL1Q9NZN1 696 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 POMT2Q9UKY4 750 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 EMCNQ9ULC0 261 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 IQANK1A0A1B0GTG1 560 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 FITM1A5D6W6 292 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF839A8K0R7 811 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 TMX2-CTNND1H3BSU7 103 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 MTX2O75431 263 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 THRAP10827 490 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 GSTM2P28161 218 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 ETV4P43268 484 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF33BQ06732 778 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 GALNT1Q10472 559 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 CAMK2BQ13554 666 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 NAA30Q147X3 362 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 TBCCQ15814 346 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 DENND2CQ68D51 928 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 PAQR3Q6TCH7 311 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 LCTLQ6UWM7 567 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 LMNTD1Q8N9Z9 388 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 SIDT2Q8NBJ9 832 aaKnown RBP6.82□□□□□ -1.32
LIMA1-202ENST00000394943 RSC1A1Q92681 617 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 FCRL4Q96PJ5 515 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 PARVBQ9HBI1 364 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 NMRAL1Q9HBL8 299 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 TMBIM4Q9HC24 238 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 FSCN3Q9NQT6 498 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 PRDM8Q9NQV8 689 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 NUDT4Q9NZJ9 180 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 PADI4Q9UM07 663 aa6.82□□□□□ -1.32
LIMA1-202ENST00000394943 ARHGEF33A8MVX0 844 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 HGSO14964 777 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 KDM1AO60341 852 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ERLIN1O75477 346 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 RFPL3O75679 317 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 SNUPNO95149 360 aaKnown RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ACP5P13686 325 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 STMN1P16949 149 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 AK4P27144 223 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PMLP29590 882 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 SHMT2P34897 504 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PRRT3Q5FWE3 981 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 PERM1Q5SV97 790 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF425Q6IV72 752 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 FBXO38Q6PIJ6 1188 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 RNF44Q7L0R7 432 aa6.81□□□□□ -1.32
LIMA1-202ENST00000394943 BPHLQ86WA6 291 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-202ENST00000394943 TMPRSS12Q86WS5 348 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms