RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SLC25A14O95258 325 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 NPPAP01160 153 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 SMIM18P0DKX4 95 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 ERVPABLB-1P60509 514 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 DCTN2Q13561 401 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 IMPG1Q17R60 797 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PPP4R4Q6NUP7 873 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 RBM44Q6ZP01 1051 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 GOLGA7Q7Z5G4 137 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 TSPAN14Q8NG11 270 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 GIPC3Q8TF64 312 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 TMEM125Q96AQ2 219 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 SLC45A3Q96JT2 553 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PPP3R2Q96LZ3 170 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 NEURL2Q9BR09 285 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 HERC2P3Q9BVR0 1158 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 EHD1Q9H4M9 534 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 IPPKQ9H8X2 491 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 OPTCQ9UBM4 332 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 ANAPC2Q9UJX6 822 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 STOML2Q9UJZ1 356 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PADI4Q9UM07 663 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 EIF3LQ9Y262 564 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 IFRD1O00458 451 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 ICMTO60725 284 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 ADH1AP07327 375 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 UMPSP11172 480 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 GJA1P17302 382 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PRKACAP17612 351 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 RPS3P23396 243 aaKnown RBP eCLIP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 SERPINA4P29622 427 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 SOX11P35716 441 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 MRPL19P49406 292 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 TXNL4AP83876 142 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 SUZ12Q15022 739 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 AP5B1Q2VPB7 878 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 RABL3Q5HYI8 236 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 Q6ZNX1 250 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CRIPAKQ8N1N5 446 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CHCHD4Q8N4Q1 142 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 Q8N9G6 341 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 TRPV3Q8NET8 790 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 RMND5BQ96G75 393 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CENPNQ96H22 339 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 SLC29A1Q99808 456 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 C8orf4Q9NR00 106 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 TRNAU1APQ9NX07 287 aaKnown RBP9.47□□□□□ -0.89
COL6A3-204ENST00000392003 CFAP97Q9P2B7 532 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 ZMYM5Q9UJ78 669 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 PCDHA9Q9Y5H5 950 aa9.47□□□□□ -0.89
COL6A3-204ENST00000392003 GLYATL1P3A0A0U1RQE8 302 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 K7ERQ8 282 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 GPR39O43194 453 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 HTRA2O43464 458 aaPredicted RBP9.46□□□□□ -0.89
COL6A3-204ENST00000392003 FGBP02675 491 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 SLC2A4P14672 509 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 HSPA7P48741 367 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 CENPAP49450 140 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 CREMQ03060 361 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 EMX2Q04743 252 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 MAD2L1Q13257 205 aaPredicted RBP9.46□□□□□ -0.89
COL6A3-204ENST00000392003 HMBOX1Q6NT76 420 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 LETMD1Q6P1Q0 360 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 CCDC149Q6ZUS6 474 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 PROSER1Q86XN7 944 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 TCEAL8Q8IYN2 117 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 TBC1D21Q8IYX1 336 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 ZBTB2Q8N680 514 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 OR4F6Q8NGB9 312 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 PIH1D2Q8WWB5 315 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 FANCEQ9HB96 536 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 UCKL1Q9NWZ5 548 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 ZNF225Q9UK10 706 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 ANKRD12Q6UB98 2062 aa9.46□□□□□ -0.89
COL6A3-204ENST00000392003 RGS14O43566 566 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 SOCS5O75159 536 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 TRBC1P01850 177 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 TFAP2AP05549 437 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 C8AP07357 584 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 CNPP09543 421 aaKnown RBP9.46□□□□□ -0.9
COL6A3-204ENST00000392003 PABPC1P11940 636 aaKnown RBP9.46□□□□□ -0.9
COL6A3-204ENST00000392003 SPAM1P38567 509 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 NFATC2Q13469 925 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 GK3PQ14409 553 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 GPR33Q49SQ1 333 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 NADK2Q4G0N4 442 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 MPPE1Q53F39 396 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 PAGE3Q5JUK9 113 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 NEK5Q6P3R8 708 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 FBXO46Q6PJ61 603 aaPredicted RBP9.46□□□□□ -0.9
COL6A3-204ENST00000392003 PRR23BQ6ZRT6 265 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 HID1Q8IV36 788 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 CHERPQ8IWX8 916 aaKnown RBP9.46□□□□□ -0.9
COL6A3-204ENST00000392003 APCDD1Q8J025 514 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 CBR4Q8N4T8 237 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 OR2T11Q8NH01 316 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 NSMCE2Q96MF7 247 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 UQCC2Q9BRT2 126 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 TRAV19A0A0A6YYK7 116 aa9.46□□□□□ -0.9
COL6A3-204ENST00000392003 FUOMA2VDF0 154 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms