RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TMEM25Q86YD3 366 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 OR8J3Q8NGG0 315 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 SLC13A3Q8WWT9 602 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 USP7Q93009 1102 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 ULK4Q96C45 1275 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 ZBTB18Q99592 522 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 CHID1Q9BWS9 393 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 LRTM1Q9HBL6 345 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 ZFP14Q9HCL3 533 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 C8orf4Q9NR00 106 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 VAPAQ9P0L0 249 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 ZNHIT2Q9UHR6 403 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 SLCO3A1Q9UIG8 710 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 MBD1Q9UIS9 605 aaPredicted RBP20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 PDE10AQ9Y233 779 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 PLXNB3Q9ULL4 1909 aa20.39■□□□□ 0.85
CCDC88B-203ENST00000359902 DFNA5O60443 496 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 SEC22BO75396 215 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 KCNH1O95259 989 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 POP4O95707 220 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 MT-ND1P03886 318 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 UGT2B4P06133 528 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 CSF2RAP15509 400 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 MYF6P23409 242 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 SLC36A3Q495N2 470 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 CARD16Q5EG05 197 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 CCDC149Q6ZUS6 474 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 LIX1Q8N485 282 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 GTF2H4Q92759 462 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 ZNF583Q96ND8 569 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 BRD9Q9H8M2 597 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 PCDH10Q9P2E7 1040 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 TMPRSS11EQ9UL52 423 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 V9GYQ6 96 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 CLDN9O95484 217 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 LDLRP01130 860 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 C1SP09871 688 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 C7P10643 843 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 ZNF23P17027 643 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 CCR2P41597 374 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 ZXDCQ2QGD7 858 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 FAM174BQ3ZCQ3 159 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 LRRC73Q5JTD7 316 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 CDKL4Q5MAI5 379 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 BORAQ6PGQ7 559 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 GALNT13Q8IUC8 556 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 RIMKLAQ8IXN7 391 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 BPIFB1Q8TDL5 484 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 ZNF641Q96N77 438 aaPredicted RBP20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 SLC32A1Q9H598 525 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 CLK4Q9HAZ1 481 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 ARL15Q9NXU5 204 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 DMTF1Q9Y222 760 aa20.38■□□□□ 0.85
CCDC88B-203ENST00000359902 MYOFQ9NZM1 2061 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 EI24O14681 340 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 GRM6O15303 877 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 CXCL14O95715 111 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 CLTBP09497 229 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 AOAHP28039 575 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 GGT5P36269 586 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 IMPG1Q17R60 797 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 CACHD1Q5VU97 1274 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 SUSD1Q6UWL2 747 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 ELMOD1Q8N336 334 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 TRIML2Q8N7C3 387 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 KREMEN2Q8NCW0 462 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 HM13Q8TCT9 377 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 SLC22A17Q8WUG5 538 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 MTFMTQ96DP5 389 aaKnown RBP20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 RNF145Q96MT1 663 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 SLC29A3Q9BZD2 475 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 DPY30Q9C005 99 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 ASIC5Q9NY37 505 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 SLC8A2Q9UPR5 921 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 OR56A5P0C7T3 313 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 CDH1P12830 882 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 GGT1P19440 569 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 AKT1P31749 480 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 SPINT3P49223 89 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 PYCR3Q53H96 274 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 KRTCAP2Q8N6L1 136 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 CHST14Q8NCH0 376 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 GLB1L3Q8NCI6 653 aaPredicted RBP20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 ASAH2Q9NR71 780 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 HCFC1R1Q9NWW0 138 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 B4GALT6Q9UBX8 382 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 ZNF639Q9UID6 485 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 SLC25A13Q9UJS0 675 aa20.37■□□□□ 0.85
CCDC88B-203ENST00000359902 CCDC160A6NGH7 325 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 EIF3FO00303 357 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 CCL16O15467 120 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 GBX1Q14549 363 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 MAPKAPK3Q16644 382 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 SPANXN4Q5MJ08 99 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 UBE2R2Q712K3 238 aaPredicted RBP20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 OSCP1Q8WVF1 389 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 SLC12A9Q9BXP2 914 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 CEP44Q9C0F1 390 aa20.36■□□□□ 0.85
CCDC88B-203ENST00000359902 CLMPQ9H6B4 373 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms