RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ZXDCQ2QGD7 858 aaPredicted RBP18.96■□□□□ 0.63
COL9A3-201ENST00000343916 AASDHQ4L235 1098 aaPredicted RBP18.96■□□□□ 0.63
COL9A3-201ENST00000343916 USP45Q70EL2 814 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 LIX1Q8N485 282 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 RMND5BQ96G75 393 aaPredicted RBP18.96■□□□□ 0.63
COL9A3-201ENST00000343916 LMLNQ96KR4 655 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 COPS8Q99627 209 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 C9orf16Q9BUW7 83 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 ARL15Q9NXU5 204 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 MYRFQ9Y2G1 1151 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 ZNF510Q9Y2H8 683 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 MYO7AQ13402 2215 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 ARNTLO00327 626 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 STK16O75716 305 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 SEC24DO94855 1032 aaPredicted RBP18.95■□□□□ 0.62
COL9A3-201ENST00000343916 NPPAP01160 153 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 NR1H2P55055 460 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 TTLL9Q3SXZ7 439 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 SUSD1Q6UWL2 747 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 Q6ZVU0 165 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 MFSD2AQ8NA29 543 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 CHST14Q8NCH0 376 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 ECHDC3Q96DC8 303 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 ZBP1Q9H171 429 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 PREBQ9HCU5 417 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 ZDHHC3Q9NYG2 299 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 hCG_2014768A0A024R1R8 64 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 NEDD8-MDP1E9PL57 170 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 EPORP19235 508 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 MERTKQ12866 999 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 IMPG1Q17R60 797 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 SPANXN4Q5MJ08 99 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 TRIML2Q8N7C3 387 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 CYGBQ8WWM9 190 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 SLC13A3Q8WWT9 602 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 TMIGD2Q96BF3 282 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 PYCR2Q96C36 320 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 FBXL20Q96IG2 436 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 VPS50Q96JG6 964 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 NSMCE2Q96MF7 247 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 CHID1Q9BWS9 393 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 SOX17Q9H6I2 414 aaPredicted RBP18.95■□□□□ 0.62
COL9A3-201ENST00000343916 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.95■□□□□ 0.62
COL9A3-201ENST00000343916 PDE10AQ9Y233 779 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 HS3ST2Q9Y278 367 aa18.95■□□□□ 0.62
COL9A3-201ENST00000343916 DYTNA2CJ06 578 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 H3BSA7 217 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 GNPDA1P46926 289 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 PWP1Q13610 501 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 VRK3Q8IV63 474 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 PACRGLQ8N7B6 248 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 MAGEE2Q8TD90 523 aaPredicted RBP18.94■□□□□ 0.62
COL9A3-201ENST00000343916 NTMT1Q9BV86 223 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 IKZF5Q9H5V7 419 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 TMEM45AQ9NWC5 275 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 KCTD5Q9NXV2 234 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 TMPRSS11EQ9UL52 423 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 EIF3LQ9Y262 564 aaKnown RBP18.94■□□□□ 0.62
COL9A3-201ENST00000343916 MANBAO00462 879 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 KCNH1O95259 989 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 RASAL1O95294 804 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 ANXA5P08758 320 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 C1SP09871 688 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 EBLN1P0CF75 366 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 PCNAP12004 261 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 MSH3P20585 1137 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 FXNQ16595 210 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 TMTC4Q5T4D3 741 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 OTOP2Q7RTS6 562 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 PROSER1Q86XN7 944 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 TBC1D21Q8IYX1 336 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 UBTD2Q8WUN7 234 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 TCEAL4Q96EI5 215 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 C19orf43Q9BQ61 176 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 BEGAINQ9BUH8 593 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 BRD9Q9H8M2 597 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 ACTR8Q9H981 624 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 RDH14Q9HBH5 336 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 LRTM1Q9HBL6 345 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 B4GALT6Q9UBX8 382 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 PADI4Q9UM07 663 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 PCDHB3Q9Y5E6 796 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 PLXNB3Q9ULL4 1909 aa18.94■□□□□ 0.62
COL9A3-201ENST00000343916 FCGR1AP12314 374 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 ZNF23P17027 643 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 NFKBIAP25963 317 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 PCSK6P29122 969 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 CLCN2P51788 898 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 NEK2P51955 445 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 BOP1Q14137 746 aaKnown RBP18.93■□□□□ 0.62
COL9A3-201ENST00000343916 TBPL2Q6SJ96 375 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 SPRED1Q7Z699 444 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 METTL3Q86U44 580 aaKnown RBP18.93■□□□□ 0.62
COL9A3-201ENST00000343916 ZNF786Q8N393 782 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 PAPD5Q8NDF8 572 aaKnown RBP18.93■□□□□ 0.62
COL9A3-201ENST00000343916 OR10A6Q8NH74 314 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 GTF2H4Q92759 462 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 ZNF583Q96ND8 569 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 DPY30Q9C005 99 aa18.93■□□□□ 0.62
COL9A3-201ENST00000343916 CTSAP10619 480 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms