RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SRFP11831 508 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 IGFALSP35858 605 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 MASP1P48740 699 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 IRX1P78414 480 aaPredicted RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 SLC9A5Q14940 896 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 VPS26BQ4G0F5 336 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 SCUBE1Q8IWY4 988 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 ADGRG2Q8IZP9 1017 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 LRRN4CLQ8ND94 238 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 ADAMTS15Q8TE58 950 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 TWIST2Q8WVJ9 160 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 CYGBQ8WWM9 190 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 RGMAQ96B86 450 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 CMTM7Q96FZ5 175 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 PANX1Q96RD7 426 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 KRT33AO76009 404 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 TMEM63AO94886 807 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 MATN4O95460 622 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 SYNPOQ8N3V7 929 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 CHST14Q8NCH0 376 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 TRIB3Q96RU7 358 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 PIF1Q9H611 641 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 IMPAD1Q9NX62 359 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 SCN3BQ9NY72 215 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 SLC2A6Q9UGQ3 507 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 EIF2B4Q9UI10 523 aaKnown RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 CFAP20Q9Y6A4 193 aaKnown RBP9.96□□□□□ -0.81
USP54-201ENST00000339859 TCHHQ07283 1943 aa9.96□□□□□ -0.81
USP54-201ENST00000339859 FCHO1O14526 889 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 CD72P21854 359 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 SAMD4BQ5PRF9 694 aaKnown RBP9.96□□□□□ -0.82
USP54-201ENST00000339859 PARM1Q6UWI2 310 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 GAREM2Q75VX8 874 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 PLXDC1Q8IUK5 500 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 APOLD1Q96LR9 279 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 ASB16Q96NS5 453 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 OR52E6Q96RD3 313 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 A0A1W2PPM1 405 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 RFXANKO14593 260 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 KERAO60938 352 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 SLC22A3O75751 556 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 LRATO95237 230 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 HOXD9P28356 352 aaPredicted RBP9.96□□□□□ -0.82
USP54-201ENST00000339859 CDH13P55290 713 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 ZNF572Q7Z3I7 529 aaPredicted RBP9.96□□□□□ -0.82
USP54-201ENST00000339859 THOC6Q86W42 341 aaKnown RBP9.96□□□□□ -0.82
USP54-201ENST00000339859 NUDT13Q86X67 352 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 SNX32Q86XE0 403 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 CILP2Q8IUL8 1156 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 RBM12BQ8IXT5 1001 aaKnown RBP9.96□□□□□ -0.82
USP54-201ENST00000339859 LENG8Q96PV6 779 aaPredicted RBP9.96□□□□□ -0.82
USP54-201ENST00000339859 C1orf50Q9BV19 199 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 DDX18Q9NVP1 670 aaKnown RBP9.96□□□□□ -0.82
USP54-201ENST00000339859 ERVK-11Q9UQG0 969 aa9.96□□□□□ -0.82
USP54-201ENST00000339859 YBX2Q9Y2T7 364 aaKnown RBP9.96□□□□□ -0.82
USP54-201ENST00000339859 A0A0J9YVX5 310 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 NDUFS4O43181 175 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 SLC28A2O43868 658 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 SEPHS1P49903 392 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 NRG3P56975 720 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 EGFLAMQ63HQ2 1017 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 TMEM26Q6ZUK4 368 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 ADGRD2Q7Z7M1 963 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 MIPOL1Q8TD10 442 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 HCAR2Q8TDS4 363 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 DGAT2Q96PD7 388 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 ADNPQ9H2P0 1102 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 CCDC134Q9H6E4 229 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 HRASLS2Q9NWW9 162 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 PADI2Q9Y2J8 665 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 CHRM1P11229 460 aaPredicted RBP9.95□□□□□ -0.82
USP54-201ENST00000339859 TRAF2Q12933 501 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 SLBPQ14493 270 aaKnown RBP eCLIP9.95□□□□□ -0.82
USP54-201ENST00000339859 TOR1AIP1Q5JTV8 583 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 PAQR3Q6TCH7 311 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 DHFR2Q86XF0 187 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 C2CD4AQ8NCU7 369 aaPredicted RBP9.95□□□□□ -0.82
USP54-201ENST00000339859 APOOQ9BUR5 198 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 DERL2Q9GZP9 239 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 EGFP01133 1207 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 HSPA13P48723 471 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 SPINT3P49223 89 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 BST1Q10588 318 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 MRPL58Q14197 206 aaKnown RBP9.95□□□□□ -0.82
USP54-201ENST00000339859 ZNF77Q15935 545 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 NEK5Q6P3R8 708 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 BBIP1A8MTZ0 92 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 GPR89AB7ZAQ6 455 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 GPR89BP0CG08 455 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 TYRP1P17643 537 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 ATP6V1B2P21281 511 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 NOS3P29474 1203 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 SMIM11AP58511 58 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 SRP54P61011 504 aaKnown RBP9.95□□□□□ -0.82
USP54-201ENST00000339859 PRR5P85299 388 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 PPM1JQ5JR12 505 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 P3H2Q8IVL5 708 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 NATD1Q8N6N6 113 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 ZNF563Q8TA94 476 aa9.95□□□□□ -0.82
USP54-201ENST00000339859 EXOSC8Q96B26 276 aaKnown RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms