RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 SLC35F1Q5T1Q4 408 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RNASEH2BQ5TBB1 312 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MEDAGQ5VYS4 303 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 WDR59Q6PJI9 974 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FIGLAQ6QHK4 219 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LRRN1Q6UXK5 716 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SPATA19Q7Z5L4 167 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SLC9A9Q8IVB4 645 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MCFD2Q8NI22 146 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ING5Q8WYH8 240 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HTRA1Q92743 480 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PRR11Q96HE9 360 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 AGPAT1Q99943 283 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 THUMPD3Q9BV44 507 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 OR51E2Q9H255 320 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ANKRA2Q9H9E1 313 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PXMP2Q9NR77 195 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 KIAA1522Q9P206 1035 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SPASTQ9UBP0 616 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PCDHA3Q9Y5H8 950 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TUBAL3A6NHL2 446 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 AQP12BA6NM10 295 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FAM227AF5H4B4 570 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 EI24O14681 340 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HDAC3O15379 428 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 AP2A2O94973 939 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 IFNA2P01563 188 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SPATA31D3P0C874 917 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FDPSP14324 419 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ETS2P15036 469 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 UBA1P22314 1058 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GADD45AP24522 165 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 AVPR1BP47901 424 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CCNG1P51959 295 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RAB5BP61020 215 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RHOAP61586 193 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PRR5P85299 388 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RHAGQ02094 409 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NSUN2Q08J23 767 aaKnown RBP eCLIP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MYBPHQ13203 477 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 BCL2A1Q16548 175 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 WDR72Q3MJ13 1102 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RBM48Q5RL73 367 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF549Q6P9A3 640 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RTL4Q6ZR62 310 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SPATA31D4Q6ZUB0 917 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 C16orf86Q6ZW13 317 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TBC1D10CQ8IV04 446 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 AQP12AQ8IXF9 295 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 OR5T2Q8NGG2 359 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 METTL6Q8TCB7 284 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PHF10Q8WUB8 498 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DNAJA4Q8WW22 397 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RSC1A1Q92681 617 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PNPLA2Q96AD5 504 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CPNE5Q9HCH3 593 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MARK1Q9P0L2 795 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LIMD1Q9UGP4 676 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TMEM5Q9Y2B1 443 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 F5P12259 2224 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FAM240BA0A1B0GVZ2 78 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TCEA3O75764 348 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 OR6A2O95222 327 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SMIM10L2AP0DMW4 78 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SMIM10L2BP0DMW5 78 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RARAP10276 462 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MYCLP1P12525 358 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CSF2RAP15509 400 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CYP11B1P15538 503 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CCND3P30281 292 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 OR1D2P34982 312 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ECI1P42126 302 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ABCG1P45844 678 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GPR1P46091 355 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FMO5P49326 533 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SEC24CP53992 1094 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GRM4Q14833 912 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DUOXA1Q1HG43 343 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PDSS1Q5T2R2 415 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GTF2IRD2BQ6EKJ0 949 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 BEND5Q7L4P6 421 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 C11orf96Q7Z7L8 435 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GTF2IRD2Q86UP8 949 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MIB1Q86YT6 1006 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FBXW8Q8N3Y1 598 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CCDC54Q8NEL0 328 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 KLHL6Q8WZ60 621 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LENG1Q96BZ8 264 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF668Q96K58 619 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SPIN2AQ99865 258 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SPIN2BQ9BPZ2 258 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MXRA8Q9BRK3 442 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 IFT27Q9BW83 186 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CHID1Q9BWS9 393 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TASP1Q9H6P5 420 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LMAN1LQ9HAT1 526 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TDP1Q9NUW8 608 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MLXQ9UH92 298 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PCYOX1Q9UHG3 505 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms