RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 STRADAQ7RTN6 431 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 DHRS1Q96LJ7 313 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ARL8BQ9NVJ2 186 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 DOLKQ9UPQ8 538 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PCDHGA4Q9Y5G9 962 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 TJP1Q07157 1748 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 LMTK3Q96Q04 1460 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 FAM149AA5PLN7 773 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 CAPN8A6NHC0 703 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 OR10H3O60404 316 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 IFNW1P05000 195 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 LTA4HP09960 611 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PTBP1P26599 531 aaKnown RBP eCLIP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 GPX6P59796 221 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 RAB10P61026 200 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 CSTF1Q05048 431 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 DDX39BQ13838 428 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 MFSD10Q14728 455 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF621Q6ZSS3 439 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SYT13Q7L8C5 426 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 TMEM161BQ8NDZ6 487 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 OR2W6PQ8NHA6 318 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 NCSTNQ92542 709 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 TESCQ96BS2 214 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SPATA13Q96N96 652 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 OCSTAMPQ9BR26 566 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 NPLQ9BXD5 320 aaPredicted RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PLEKHA1Q9HB21 404 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 LUZP4Q9P127 313 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 FKBPLQ9UIM3 349 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 MYO9AB2RTY4 2548 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SIPA1L1O43166 1804 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SEC14L2O76054 403 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 MAT2AP31153 395 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SLC7A2P52569 658 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PMPCAQ10713 525 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PTP4A2Q12974 167 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 LARS2Q15031 903 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF367Q7RTV3 350 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 AMIGO1Q86WK6 493 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ARL14Q8N4G2 192 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SAMD12Q8N8I0 201 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ZUFSPQ96AP4 578 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ZC3H4Q9UPT8 1303 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 OVOS2A0A0J9YW53 1432 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 OVOS2Q6IE36 1432 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SHPRHQ149N8 1683 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PRAMEF2O60811 474 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 BTDP43251 543 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ART1P52961 327 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 CD83Q01151 205 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 RELAQ04206 551 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 TTLL4Q14679 1199 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 QPCTQ16769 361 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PGS1Q32NB8 556 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 CYP2R1Q6VVX0 501 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 B3GALNT2Q8NCR0 500 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 FCAMRQ8WWV6 532 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 BAP1Q92560 729 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 BTBD1Q9H0C5 482 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 DUSP22Q9NRW4 184 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 LYARQ9NX58 379 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 FAM237AA0A1B0GTK4 181 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF705EA8MWA4 302 aaPredicted RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 OGTO15294 1046 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SGCEO43556 437 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 GSTM2P28161 218 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 HSPA14Q0VDF9 509 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 UPP1Q16831 310 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ZC3H12AQ5D1E8 599 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 FNBP1LQ5T0N5 605 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 KIAA1614Q5VZ46 1190 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 UGT2A3Q6UWM9 527 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SLC16A9Q7RTY1 509 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ANKS1BQ7Z6G8 1248 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 MILR1Q7Z6M3 343 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 FAM35AQ86V20 835 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 SLC22A16Q86VW1 577 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 GID4Q8IVV7 300 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 KLHL36Q8N4N3 616 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 OR2L5Q8NG80 312 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 TMEM39BQ9GZU3 492 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 FAM83DQ9H4H8 585 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 NIPAL2Q9H841 368 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 EIF2B3Q9NR50 452 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 UBFD1O14562 309 aaKnown RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 DCLK1O15075 740 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 CYP26A1O43174 497 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PLXNA2O75051 1894 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PNPP00491 289 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF182P17025 639 aaPredicted RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 BMP6P22004 513 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 OR3A3P47888 321 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 OR3A2P47893 321 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 PPP2R2BQ00005 443 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 MLLT1Q03111 559 aaPredicted RBP4.77□□□□□ -1.65
CSMD3-201ENST00000297405 GPR180Q86V85 440 aa4.77□□□□□ -1.65
CSMD3-201ENST00000297405 LMTK2Q8IWU2 1503 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms