RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 H3BNH8 94 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 SEC22BO75396 215 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 NPPAP01160 153 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 RPIAP49247 311 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 CDH15P55291 814 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 PWP1Q13610 501 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 IMPG1Q17R60 797 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 SPANXN4Q5MJ08 99 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 AP1ARQ63HQ0 302 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 SLC13A3Q8WWT9 602 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 RNF145Q96MT1 663 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 C19orf43Q9BQ61 176 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 C9orf16Q9BUW7 83 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 ADI1Q9BV57 179 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 BRD9Q9H8M2 597 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 TMEM45AQ9NWC5 275 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 NDUFA13Q9P0J0 144 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 EIF3LQ9Y262 564 aaKnown RBP19.64■□□□□ 0.73
VPS53-201ENST00000291074 CXCL14O95715 111 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 PPM1AP35813 382 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 FXNQ16595 210 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 AASDHQ4L235 1098 aaPredicted RBP19.64■□□□□ 0.73
VPS53-201ENST00000291074 PACRGLQ8N7B6 248 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 RMND5BQ96G75 393 aaPredicted RBP19.64■□□□□ 0.73
VPS53-201ENST00000291074 NSMCE2Q96MF7 247 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 MCCC1Q96RQ3 725 aaPredicted RBP19.64■□□□□ 0.73
VPS53-201ENST00000291074 NTMT1Q9BV86 223 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 IKZF5Q9H5V7 419 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 RDH14Q9HBH5 336 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 ASAH2Q9NR71 780 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 MAFFQ9ULX9 164 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 MYRFQ9Y2G1 1151 aa19.64■□□□□ 0.73
VPS53-201ENST00000291074 DYTNA2CJ06 578 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 MSH3P20585 1137 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.63■□□□□ 0.73
VPS53-201ENST00000291074 SERPINA13PQ6UXR4 307 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 SPRED1Q7Z699 444 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 PYCR2Q96C36 320 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 VPS50Q96JG6 964 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 BEGAINQ9BUH8 593 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 SOX17Q9H6I2 414 aaPredicted RBP19.63■□□□□ 0.73
VPS53-201ENST00000291074 LRTM1Q9HBL6 345 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 TRPS1Q9UHF7 1281 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 PCDHB3Q9Y5E6 796 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 ANXA5P08758 320 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 EBLN1P0CF75 366 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 GNPDA1P46926 289 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 CLCN2P51788 898 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 NR1H2P55055 460 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 BOP1Q14137 746 aaKnown RBP19.63■□□□□ 0.73
VPS53-201ENST00000291074 CARD16Q5EG05 197 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 UBE2R2Q712K3 238 aaPredicted RBP19.63■□□□□ 0.73
VPS53-201ENST00000291074 PAPD5Q8NDF8 572 aaKnown RBP19.63■□□□□ 0.73
VPS53-201ENST00000291074 FBXL20Q96IG2 436 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 CHID1Q9BWS9 393 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 DPY30Q9C005 99 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 ACTR8Q9H981 624 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 SLC25A13Q9UJS0 675 aa19.63■□□□□ 0.73
VPS53-201ENST00000291074 KLHL33A6NCF5 533 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 GRXCR2A6NFK2 248 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 SLC28A1O00337 649 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 RASAL1O95294 804 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 FCGR1AP12314 374 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 MERTKQ12866 999 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 TRIM46Q7Z4K8 759 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 TBC1D21Q8IYX1 336 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 ELMOD1Q8N336 334 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 KLHL23Q8NBE8 558 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 CYGBQ8WWM9 190 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 GTF2H4Q92759 462 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 SH3GL3Q99963 347 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 PADI4Q9UM07 663 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 SEC24DO94855 1032 aaPredicted RBP19.62■□□□□ 0.73
VPS53-201ENST00000291074 KCNH1O95259 989 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 SPINT3P49223 89 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 GTDC1Q4AE62 458 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 TMTC4Q5T4D3 741 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 PROSER1Q86XN7 944 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 SCAMP4Q969E2 229 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 TMIGD2Q96BF3 282 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 ZNF583Q96ND8 569 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 ZBTB18Q99592 522 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 BBS2Q9BXC9 721 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 ACPTQ9BZG2 426 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 FAM8A1Q9UBU6 413 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 MAGEL2Q9UJ55 1249 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 PPIL1Q9Y3C6 166 aa19.62■□□□□ 0.73
VPS53-201ENST00000291074 TRIM43BA6NCK2 446 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 GRM6O15303 877 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 RFPL2O75678 378 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 LDLRP01130 860 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 PDYNP01213 254 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 UMPSP11172 480 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 NFKBIAP25963 317 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 AKT1P31749 480 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 NEK2P51955 445 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 LSAMPQ13449 338 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 TBPL2Q6SJ96 375 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 OFCC1Q8IZS5 231 aa19.61■□□□□ 0.73
VPS53-201ENST00000291074 FAM86B1Q8N7N1 296 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms