RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PCSK2P16519 638 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 GDF5P43026 501 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 MRPS21P82921 87 aaKnown RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 CREB5Q02930 508 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 MLLT1Q03111 559 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 CDC16Q13042 620 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 PTPRRQ15256 657 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 TCHHL1Q5QJ38 904 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 CYP20A1Q6UW02 462 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 KIAA1958Q8N8K9 716 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 CD200R1Q8TD46 325 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 KCTD14Q9BQ13 255 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 RTKNQ9BST9 563 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 LRMDAQ9H2I8 198 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 PNMA8BQ9ULN7 279 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 SLC22A14Q9Y267 594 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 AP3M1Q9Y2T2 418 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 KNL1Q8NG31 2342 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 DYTNA2CJ06 578 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 SLC16A5O15375 505 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 RPSAP08865 295 aaKnown RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 GSTM1P09488 218 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 PSMA4P25789 261 aaKnown RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 CTHP32929 405 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 BDKRB1P46663 353 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 GTF2A1P52655 376 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 GSTM4Q03013 218 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 TP53BP2Q13625 1128 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 GPR180Q86V85 440 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 DCUN1D3Q8IWE4 304 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 ICA1LQ8NDH6 482 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 CHFRQ96EP1 664 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 IGSF5Q9NSI5 407 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 ACSL5Q9ULC5 683 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 WASF2Q9Y6W5 498 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 BBIP1A8MTZ0 92 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 GPR39O43194 453 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 LRRC74AQ0VAA2 488 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 GK5Q6ZS86 529 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 ZNF621Q6ZSS3 439 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 RPS27LQ71UM5 84 aaKnown RBP11.34□□□□□ -0.59
VPS4A-201ENST00000254950 GOLGA7Q7Z5G4 137 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 HORMAD1Q86X24 394 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS4A-201ENST00000254950 ACVR1CQ8NER5 493 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 ACTRT2Q8TDY3 377 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 CDK15Q96Q40 435 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 NELL2Q99435 816 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 EFCAB11Q9BUY7 163 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 VCX3AQ9NNX9 186 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 PRSS16Q9NQE7 514 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 EURLQ9NYK6 297 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 CYP8B1Q9UNU6 501 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 OARD1Q9Y530 152 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 KLHL33A6NCF5 533 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 GFRA2O00451 464 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 KCNH1O95259 989 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 C1SP09871 688 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 CMPK1P30085 196 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 AGTR2P50052 363 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 OR4D1Q15615 310 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 PRSS36Q5K4E3 855 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 RNF217Q8TC41 542 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 GLMNQ92990 594 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 OR52B2Q96RD2 323 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 LRRC3Q9BY71 257 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 CD244Q9BZW8 370 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 PADI4Q9UM07 663 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 V9GYQ6 96 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 CXorf51AA0A1B0GTR3 108 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 URADA6NGE7 173 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 H0Y858 1186 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 RPL10P27635 214 aaKnown RBP11.34□□□□□ -0.59
VPS4A-201ENST00000254950 PRDX6P30041 224 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 NFKB2Q00653 900 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 RGS1Q08116 209 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 RPLP0P6Q8NHW5 317 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 SMPDL3AQ92484 453 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 EME1Q96AY2 570 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 BBS4Q96RK4 519 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 FAM83CQ9BQN1 747 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 FAIM2Q9BWQ8 316 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 SLC29A3Q9BZD2 475 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 C1orf109Q9NX04 203 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 PSME2Q9UL46 239 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 PRPF19Q9UMS4 504 aaKnown RBP11.34□□□□□ -0.59
VPS4A-201ENST00000254950 OR51B4Q9Y5P0 310 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 SIP14410 1827 aa11.34□□□□□ -0.59
VPS4A-201ENST00000254950 PRRT4C9JH25 899 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 G3V2L1 256 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 TPST1O60507 370 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 ABCB1P08183 1280 aaPredicted RBP11.33□□□□□ -0.59
VPS4A-201ENST00000254950 CYP4F2P78329 520 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 FOXD4Q12950 439 aaPredicted RBP11.33□□□□□ -0.59
VPS4A-201ENST00000254950 TEAD4Q15561 434 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 UNC50Q53HI1 259 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 PRAMEF14Q5SWL7 426 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 PRAMEF13Q5VWM6 474 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 FAM217AQ8IXS0 508 aa11.33□□□□□ -0.59
VPS4A-201ENST00000254950 OR4F6Q8NGB9 312 aa11.33□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms