RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TRIM54Q9BYV2 358 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 CD244Q9BZW8 370 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 WDR26Q9H7D7 661 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 ARL15Q9NXU5 204 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 TRIM33Q9UPN9 1127 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 SORCS3Q9UPU3 1222 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 OR1A2Q9Y585 309 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 DNAJC15Q9Y5T4 150 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 DOCK9Q9BZ29 2069 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 PRR5-ARHGAP8B1AHC4 643 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 CCNT2O60583 730 aaKnown RBP16.5■□□□□ 0.23
CLN3-252ENST00000636907 PSIP1O75475 530 aaKnown RBP16.5■□□□□ 0.23
CLN3-252ENST00000636907 POP7O75817 140 aaKnown RBP16.5■□□□□ 0.23
CLN3-252ENST00000636907 ATP5HO75947 161 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 FSBPO95073 299 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 ESRRBO95718 433 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 GABRG2P18507 467 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 NCF2P19878 526 aaPredicted RBP16.5■□□□□ 0.23
CLN3-252ENST00000636907 MAT2AP31153 395 aaKnown RBP16.5■□□□□ 0.23
CLN3-252ENST00000636907 TRIM23P36406 574 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 GDF5P43026 501 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 ARHGAP8P85298 464 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 MAP7D1Q3KQU3 841 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 PLA2G4EQ3MJ16 856 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 CDKL4Q5MAI5 379 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 METTL21CQ5VZV1 264 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 NXNQ6DKJ4 435 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 C11orf96Q7Z7L8 435 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 TEX9Q8N6V9 391 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 FLCNQ8NFG4 579 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 OR52B6Q8NGF0 335 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 CFAP61Q8NHU2 1237 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 FOXJ1Q92949 421 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 PTCD3Q96EY7 689 aaKnown RBP16.5■□□□□ 0.23
CLN3-252ENST00000636907 NSL1Q96IY1 281 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 ZNF382Q96SR6 550 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 NOL11Q9H8H0 719 aaKnown RBP16.5■□□□□ 0.23
CLN3-252ENST00000636907 PRKAB1Q9Y478 270 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 NUMA1Q14980 2115 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 KRT87PA6NCN2 255 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 LIN7AO14910 233 aaPredicted RBP16.49■□□□□ 0.23
CLN3-252ENST00000636907 CHUKO15111 745 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 DNAJC8O75937 253 aaPredicted RBP16.49■□□□□ 0.23
CLN3-252ENST00000636907 HIST1H2AGP0C0S8 130 aaPredicted RBP16.49■□□□□ 0.23
CLN3-252ENST00000636907 CHRNB1P11230 501 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 HIST1H2ADP20671 130 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 TPMTP51580 245 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 SFSWAPQ12872 951 aaKnown RBP16.49■□□□□ 0.23
CLN3-252ENST00000636907 NEK5Q6P3R8 708 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 ZNF852Q6ZMS4 543 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 MCOLN3Q8TDD5 553 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 TWIST2Q8WVJ9 160 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 HIST1H2AHQ96KK5 128 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 HIST1H2AJQ99878 128 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 H2AFJQ9BTM1 129 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 TUBB6Q9BUF5 446 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 FZD3Q9NPG1 666 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 OPTCQ9UBM4 332 aa16.49■□□□□ 0.23
CLN3-252ENST00000636907 C17orf113A0A1B0GUU1 675 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 ARHGEF33A8MVX0 844 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 H3BM21 787 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 OR7A17O14581 309 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 CRCPO75575 148 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 ENO1P06733 434 aaKnown RBP16.48■□□□□ 0.23
CLN3-252ENST00000636907 IGFALSP35858 605 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 ERVPABLB-1P60509 514 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 ZXDCQ2QGD7 858 aaPredicted RBP16.48■□□□□ 0.23
CLN3-252ENST00000636907 PUS10Q3MIT2 529 aaKnown RBP16.48■□□□□ 0.23
CLN3-252ENST00000636907 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.48■□□□□ 0.23
CLN3-252ENST00000636907 PRPF38BQ5VTL8 546 aaKnown RBP16.48■□□□□ 0.23
CLN3-252ENST00000636907 TMEM198Q66K66 360 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 GPR153Q6NV75 609 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 GPRIN3Q6ZVF9 776 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 ZNF687Q8N1G0 1237 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 DCBLD1Q8N8Z6 715 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 OR2L2Q8NH16 312 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 HM13Q8TCT9 377 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 ACTRT2Q8TDY3 377 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 HMGB4Q8WW32 186 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 CDK15Q96Q40 435 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 C1QTNF7Q9BXJ2 289 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 PHPT1Q9NRX4 125 aaPredicted RBP16.48■□□□□ 0.23
CLN3-252ENST00000636907 KLC4Q9NSK0 619 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 TIMM22Q9Y584 194 aa16.48■□□□□ 0.23
CLN3-252ENST00000636907 PABPN1LA6NDY0 278 aaKnown RBP16.47■□□□□ 0.23
CLN3-252ENST00000636907 MGAT4DA6NG13 374 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 K7EPI3 171 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 PIP5K1BO14986 540 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 SLC31A1O15431 190 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 STK16O75716 305 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 OR4F21O95013 312 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 CALB2P22676 271 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 ACSL1P33121 698 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 GGT5P36269 586 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 BDKRB1P46663 353 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 PKNOX1P55347 436 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 AP1S2P56377 157 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 NFE2L1Q14494 772 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 TBCCQ15814 346 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 TMEM31Q5JXX7 168 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms