RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 AVL9Q8NBF6 648 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 GPR150Q8NGU9 434 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 ELMO1Q92556 727 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 CXorf40BQ96DE9 158 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 WDR83Q9BRX9 315 aaKnown RBP17.42■□□□□ 0.38
CLN3-247ENST00000636351 CLMPQ9H6B4 373 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 IARS2Q9NSE4 1012 aaKnown RBP17.42■□□□□ 0.38
CLN3-247ENST00000636351 VPS9D1Q9Y2B5 631 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 TEX264Q9Y6I9 313 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 PIKFYVEQ9Y2I7 2098 aa17.42■□□□□ 0.38
CLN3-247ENST00000636351 PRAMEF33A0A0G2JMD5 474 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 E7ESA3 106 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 NVLO15381 856 aaKnown RBP17.41■□□□□ 0.38
CLN3-247ENST00000636351 PRAMEF10O60809 474 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 GSTM1P09488 218 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 ERVK-10P10266 1014 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 ETV5P41161 510 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 SLC1A2P43004 574 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 GSTM4Q03013 218 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 ZFP36L1Q07352 338 aaKnown RBP17.41■□□□□ 0.38
CLN3-247ENST00000636351 NFATC3Q12968 1075 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 BRD3Q15059 726 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 LINC00303Q3SY05 128 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 HSP90AA5PQ58FG0 334 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 AGAP9Q5VTM2 703 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 ZDHHC24Q6UX98 284 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 LRRC6Q86X45 466 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 DENND6AQ8IWF6 608 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 LMNTD2Q8IXW0 634 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 UNC5BQ8IZJ1 945 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 LILRA3Q8N6C8 439 aaPredicted RBP17.41■□□□□ 0.38
CLN3-247ENST00000636351 PYROXD1Q8WU10 500 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 EXTL1Q92935 676 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 CERS2Q96G23 380 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 TCF12Q99081 682 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 SLC38A3Q99624 504 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 WWP1Q9H0M0 922 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 COG4Q9H9E3 785 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 FBXO6Q9NRD1 293 aaPredicted RBP17.41■□□□□ 0.38
CLN3-247ENST00000636351 FAM114A2Q9NRY5 505 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 SCHIP1Q9P0W5 487 aaPredicted RBP17.41■□□□□ 0.38
CLN3-247ENST00000636351 CPNE7Q9UBL6 633 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 ACSL5Q9ULC5 683 aa17.41■□□□□ 0.38
CLN3-247ENST00000636351 C17orf113A0A1B0GUU1 675 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 PRR19A6NJB7 356 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 OR52A4PA6NMU1 304 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 EIF3HO15372 352 aaKnown RBP eCLIP17.4■□□□□ 0.38
CLN3-247ENST00000636351 VIPP01282 170 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 F7P08709 466 aaPredicted RBP17.4■□□□□ 0.38
CLN3-247ENST00000636351 BRAFP15056 766 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 PNLIPP16233 465 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 ALDH4A1P30038 563 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 FMO4P31512 558 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 PREPP48147 710 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 MAPK10P53779 464 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 KCNC4Q03721 635 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 CTBP1Q13363 440 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 METRNLQ641Q3 311 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 STEAP4Q687X5 459 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 WASH2PQ6VEQ5 465 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 TMPRSS9Q7Z410 1059 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 VASH2Q86V25 355 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 C17orf82Q86X59 251 aaPredicted RBP17.4■□□□□ 0.38
CLN3-247ENST00000636351 ZFAND4Q86XD8 727 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 ZNF761Q86XN6 746 aaPredicted RBP17.4■□□□□ 0.38
CLN3-247ENST00000636351 KRT222Q8N1A0 295 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 IFT81Q8WYA0 676 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 LPGAT1Q92604 370 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 C12orf66Q96MD2 445 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 CCDC68Q9H2F9 335 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 WASH6PQ9NQA3 447 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 IMP3Q9NV31 184 aaKnown RBP17.4■□□□□ 0.38
CLN3-247ENST00000636351 INTS10Q9NVR2 710 aaKnown RBP17.4■□□□□ 0.38
CLN3-247ENST00000636351 FOXJ2Q9P0K8 574 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 MTRF1LQ9UGC7 380 aaKnown RBP17.4■□□□□ 0.38
CLN3-247ENST00000636351 DMGDHQ9UI17 866 aaKnown RBP17.4■□□□□ 0.38
CLN3-247ENST00000636351 WDR37Q9Y2I8 494 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 CRYL1Q9Y2S2 319 aa17.4■□□□□ 0.38
CLN3-247ENST00000636351 IQCF5A8MTL0 148 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 IFRD1O00458 451 aaPredicted RBP17.39■□□□□ 0.37
CLN3-247ENST00000636351 ZW10O43264 779 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 WISP1O95388 367 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 RPS3P23396 243 aaKnown RBP eCLIP17.39■□□□□ 0.373e-6■□□□□ 10.3
CLN3-247ENST00000636351 FASLGP48023 281 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 CSE1LP55060 971 aaKnown RBP17.39■□□□□ 0.37
CLN3-247ENST00000636351 MPP1Q00013 466 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 KRT33BQ14525 404 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 CLCA4Q14CN2 919 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 TMED2Q15363 201 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 AMZ1Q400G9 498 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 MAP9Q49MG5 647 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 MANEAQ5SRI9 462 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 PHF19Q5T6S3 580 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 ABRAXAS1Q6UWZ7 409 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 NAPRTQ6XQN6 538 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 SLITRK4Q8IW52 837 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 PALM2Q8IXS6 379 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 GSDMBQ8TAX9 411 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 LKAAEAR1Q8TD35 194 aa17.39■□□□□ 0.37
CLN3-247ENST00000636351 USP7Q93009 1102 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms