RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 MAP9Q49MG5 647 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.67■□□□□ 0.42
CLN3-239ENST00000628023 KIAA0408Q6ZU52 694 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 LSMEM2Q8N112 164 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 SPDYE1Q8NFV5 336 aaPredicted RBP17.67■□□□□ 0.42
CLN3-239ENST00000628023 ASZ1Q8WWH4 475 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 BIRC8Q96P09 236 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 GFM1Q96RP9 751 aaKnown RBP17.67■□□□□ 0.42
CLN3-239ENST00000628023 UBL7Q96S82 380 aaPredicted RBP17.67■□□□□ 0.42
CLN3-239ENST00000628023 INSM2Q96T92 566 aaPredicted RBP17.67■□□□□ 0.42
CLN3-239ENST00000628023 LRRN3Q9H3W5 708 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 SLC17A6Q9P2U8 582 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 HEBP2Q9Y5Z4 205 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 CELSR3Q9NYQ7 3312 aa17.67■□□□□ 0.42
CLN3-239ENST00000628023 BHMG1C9JSJ3 638 aaPredicted RBP17.66■□□□□ 0.42
CLN3-239ENST00000628023 HAUS5O94927 633 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 GSTA2P09210 222 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 PDHA2P29803 388 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 CD151P48509 253 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 NR1D2Q14995 579 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 PLCL1Q15111 1095 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 ZNF658BQ4V348 819 aaPredicted RBP17.66■□□□□ 0.42
CLN3-239ENST00000628023 TEDDM1Q5T9Z0 273 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 DUS1LQ6P1R4 473 aaKnown RBP17.66■□□□□ 0.42
CLN3-239ENST00000628023 CNSTQ6PJW8 725 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 XKR5Q6UX68 686 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 RBM44Q6ZP01 1051 aaKnown RBP17.66■□□□□ 0.42
CLN3-239ENST00000628023 C3orf62Q6ZUJ4 267 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 RBM12BQ8IXT5 1001 aaKnown RBP17.66■□□□□ 0.42
CLN3-239ENST00000628023 OR10G6Q8NH81 332 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 SKA2Q8WVK7 121 aaPredicted RBP17.66■□□□□ 0.42
CLN3-239ENST00000628023 CDKL2Q92772 493 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 TSPYL1Q9H0U9 437 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 OR52A5Q9H2C5 316 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 NSMCE4AQ9NXX6 385 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 COMMD10Q9Y6G5 202 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 COLEC10Q9Y6Z7 277 aa17.66■□□□□ 0.42
CLN3-239ENST00000628023 SLC5A10A0PJK1 596 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 DUX1O43812 170 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 AOAHP28039 575 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 STX2P32856 288 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 LEPRP48357 1165 aaKnown RBP17.65■□□□□ 0.42
CLN3-239ENST00000628023 GPLD1P80108 840 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 GPR18Q14330 331 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 CDCP2Q5VXM1 449 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 CAPRIN2Q6IMN6 1127 aaKnown RBP17.65■□□□□ 0.42
CLN3-239ENST00000628023 TMEM26Q6ZUK4 368 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 CRELD1Q96HD1 420 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 FERD3LQ96RJ6 166 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 SLC40A1Q9NP59 571 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 TXNDC16Q9P2K2 825 aa17.65■□□□□ 0.42
CLN3-239ENST00000628023 PRAMEF33A0A0G2JMD5 474 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 TCRBV9S1A1TA0A576 114 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 LILRA5A6NI73 299 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 SPAG6O75602 509 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 TCEA3O75764 348 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 NDUFS1P28331 727 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 EPHA4P54764 986 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 TTLL9Q3SXZ7 439 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 NKAIN2Q5VXU1 208 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 GALNT7Q86SF2 657 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 ZBTB2Q8N680 514 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 GRAMD1AQ96CP6 724 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 ZNF578Q96N58 590 aaPredicted RBP17.64■□□□□ 0.41
CLN3-239ENST00000628023 NDNQ99608 321 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 AARSD1Q9BTE6 412 aaKnown RBP17.64■□□□□ 0.41
CLN3-239ENST00000628023 TBC1D10AQ9BXI6 508 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 UCK1Q9HA47 277 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 MOCS1Q9NZB8 636 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 TSR3Q9UJK0 312 aaKnown RBP17.64■□□□□ 0.41
CLN3-239ENST00000628023 ATXN7L1Q9ULK2 861 aaPredicted RBP17.64■□□□□ 0.41
CLN3-239ENST00000628023 NFU1Q9UMS0 254 aa17.64■□□□□ 0.41
CLN3-239ENST00000628023 IGHV1OR21-1A0A087WYE8 117 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 A0A1W2PQM1 296 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 D6RAR5 112 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 NTN3O00634 580 aaPredicted RBP17.63■□□□□ 0.41
CLN3-239ENST00000628023 CASC3O15234 703 aaKnown RBP17.63■□□□□ 0.41
CLN3-239ENST00000628023 B4GAT1O43505 415 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 CSO75390 466 aaKnown RBP17.63■□□□□ 0.41
CLN3-239ENST00000628023 VPS26AO75436 327 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 CPNE6O95741 557 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 AHSGP02765 367 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 AMD1P17707 334 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 PHBP35232 272 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 PCBP4P57723 403 aaKnown RBP17.63■□□□□ 0.41
CLN3-239ENST00000628023 PLEKHS1Q5SXH7 462 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 ZNF549Q6P9A3 640 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 USP53Q70EK8 1073 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 STRA8Q7Z7C7 330 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 PIM3Q86V86 326 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 SLC26A11Q86WA9 606 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 CTAGE3PQ8IX95 158 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 SLC22A15Q8IZD6 547 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 GPATCH11Q8N954 259 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 ZNF248Q8NDW4 579 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 CFAP61Q8NHU2 1237 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 JPH3Q8WXH2 748 aaPredicted RBP17.63■□□□□ 0.41
CLN3-239ENST00000628023 TFGQ92734 400 aaPredicted RBP17.63■□□□□ 0.41
CLN3-239ENST00000628023 KCNJ9Q92806 393 aa17.63■□□□□ 0.41
CLN3-239ENST00000628023 ATXN7L3BQ96GX2 97 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms