RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 K7EPI3 171 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 ACOX3O15254 700 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 RGS14O43566 566 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 C7P10643 843 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 NSG1P42857 185 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 CTSOP43234 321 aaPredicted RBP9.89□□□□□ -0.83
VPS53-220ENST00000576149 SNRPD1P62314 119 aaKnown RBP9.89□□□□□ -0.83
VPS53-220ENST00000576149 DEFB103AP81534 67 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 PWP1Q13610 501 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 SMU1Q2TAY7 513 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 TTLL9Q3SXZ7 439 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 TPRG1Q6ZUI0 275 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 GPR65Q8IYL9 337 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 TBC1D21Q8IYX1 336 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 ADGRG2Q8IZP9 1017 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 ZFP28Q8NHY6 868 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 ECHDC3Q96DC8 303 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 CGREF1Q99674 301 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 NTMT1Q9BV86 223 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 OAZ3Q9UMX2 235 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 PPIL1Q9Y3C6 166 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 PCDHB3Q9Y5E6 796 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 ANKRD12Q6UB98 2062 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 SLC28A1O00337 649 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 TGM5O43548 720 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 ABCB7O75027 752 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 WDR47O94967 919 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 RASAL1O95294 804 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 EBLN1P0CF75 366 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 CBSLP0DN79 551 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 SLC2A4P14672 509 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 VARSP26640 1264 aaKnown RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 CBSP35520 551 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 SOX11P35716 441 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 STK19P49842 368 aaPredicted RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 DGKQP52824 942 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 SH3BGRP55822 239 aaPredicted RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 OR4D2P58180 307 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 SEMG2Q02383 582 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 SELPLGQ14242 412 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 AAK1Q2M2I8 961 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 TMTC4Q5T4D3 741 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 LRRC66Q68CR7 880 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 BORAQ6PGQ7 559 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 TRIM46Q7Z4K8 759 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 NUDT8Q8WV74 236 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 BIRC7Q96CA5 298 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 NMD3Q96D46 503 aaKnown RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 PPM1MQ96MI6 270 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 HAUS8Q9BT25 410 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 RNF208Q9H0X6 261 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 SMOXQ9NWM0 555 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 ZDHHC3Q9NYG2 299 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 HECAQ9UBI9 543 aaPredicted RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 TRPS1Q9UHF7 1281 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 MAGEL2Q9UJ55 1249 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 EIF3LQ9Y262 564 aaKnown RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 TMA7Q9Y2S6 64 aaKnown RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 TRAV19A0A0A6YYK7 116 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 RNF103-CHMP3A0A140T963 221 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 LEFTY2O00292 366 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 NRG2O14511 850 aaPredicted RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 FFAR3O14843 346 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 GPR42O15529 346 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 ULK1O75385 1050 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 EPB42P16452 691 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 ZNF23P17027 643 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 NELFEP18615 380 aaKnown RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 MNX1P50219 401 aaPredicted RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 RPL38P63173 70 aaKnown RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 PTSQ03393 145 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 MERTKQ12866 999 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 MAD2L1Q13257 205 aaPredicted RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 GLYATQ6IB77 296 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 USP45Q70EL2 814 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 RALGPS2Q86X27 583 aaPredicted RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 GALNT13Q8IUC8 556 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 CMTM8Q8IZV2 173 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 FAM47BQ8NA70 645 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 OR8J3Q8NGG0 315 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 HM13Q8TCT9 377 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 ASIC4Q96FT7 647 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 RMND5BQ96G75 393 aaPredicted RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 MCCC1Q96RQ3 725 aaPredicted RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 SH3GL3Q99963 347 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 ADI1Q9BV57 179 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 SUV39H2Q9H5I1 410 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 PIF1Q9H611 641 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 CAAP1Q9H8G2 361 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 FARSBQ9NSD9 589 aaKnown RBP9.88□□□□□ -0.83
VPS53-220ENST00000576149 KCTD5Q9NXV2 234 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 ZNF232Q9UNY5 417 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 DMTF1Q9Y222 760 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 HS3ST2Q9Y278 367 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 NEUROG3Q9Y4Z2 214 aa9.88□□□□□ -0.83
VPS53-220ENST00000576149 A0A1W2PRU2 124 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 LOC730098B7Z3J9 87 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 STK16O75716 305 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 LRG1P02750 347 aa9.87□□□□□ -0.83
VPS53-220ENST00000576149 CCL5P13501 91 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms