RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ANKRD20A1Q5TYW2 823 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 FAM69BQ5VUD6 431 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 ANKRD20A3Q5VUR7 823 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 SNX20Q7Z614 316 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 HPS6Q86YV9 775 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 LURAP1LQ8IV03 231 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 SYTL1Q8IYJ3 562 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 FDCSPQ8NFU4 85 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 ACTL9Q8TC94 416 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 COPS8Q99627 209 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 FERMT1Q9BQL6 677 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 RBSNQ9H1K0 784 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 FAM96AQ9H5X1 160 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 COG4Q9H9E3 785 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 USP9XQ93008 2570 aaPredicted RBP20.45■□□□□ 0.86
VPS53-216ENST00000574029 PCSK5Q92824 1860 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 IGLV3-16A0A075B6K0 115 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 CCDC66A2RUB6 948 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 CFAP99D6REC4 459 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 BTN3A1O00481 513 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 DPM1O60762 260 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 AGFG2O95081 481 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 ITGALP20701 1170 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 CYP2A7P20853 494 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 HADHAP40939 763 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 CD151P48509 253 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 COPS2P61201 443 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 TMPRSS15P98073 1019 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 OTUD4Q01804 1114 aaKnown RBP20.44■□□□□ 0.86
VPS53-216ENST00000574029 PRPSAP1Q14558 356 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 DENND5AQ6IQ26 1287 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 JMJD6Q6NYC1 403 aaPredicted RBP20.44■□□□□ 0.86
VPS53-216ENST00000574029 MED25Q71SY5 747 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 ZBTB2Q8N680 514 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 TMEM102Q8N9M5 508 aaPredicted RBP20.44■□□□□ 0.86
VPS53-216ENST00000574029 GLIS1Q8NBF1 620 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 TRAPPC9Q96Q05 1148 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 NRTNQ99748 197 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 NUDT9Q9BW91 350 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 SERTAD3Q9UJW9 196 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 EFR3BQ9Y2G0 817 aa20.44■□□□□ 0.86
VPS53-216ENST00000574029 NCF4Q15080 339 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 INPP5JQ15735 1006 aaPredicted RBP20.43■□□□□ 0.86
VPS53-216ENST00000574029 GPR33Q49SQ1 333 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 CCDC181Q5TID7 509 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 GAS2L3Q86XJ1 694 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 CDKL3Q8IVW4 592 aaPredicted RBP20.43■□□□□ 0.86
VPS53-216ENST00000574029 Q8NA96 180 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 OR52E1Q8NGJ3 308 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 DPH2Q9BQC3 489 aaPredicted RBP20.43■□□□□ 0.86
VPS53-216ENST00000574029 MVB12BQ9H7P6 319 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 ARNT2Q9HBZ2 717 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 ZDHHC3Q9NYG2 299 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 PLEKHB1Q9UF11 243 aaPredicted RBP20.43■□□□□ 0.86
VPS53-216ENST00000574029 FEZ2Q9UHY8 353 aaPredicted RBP20.43■□□□□ 0.86
VPS53-216ENST00000574029 TFR2Q9UP52 801 aa20.43■□□□□ 0.86
VPS53-216ENST00000574029 SPTBP11277 2137 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 TRBV5-4A0A0C4DH59 114 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 IFRD1O00458 451 aaPredicted RBP20.42■□□□□ 0.86
VPS53-216ENST00000574029 ZNF185O15231 689 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 MAP3K7O43318 606 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 LDB2O43679 373 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 LMAN1P49257 510 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 RRADP55042 308 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 RPA4Q13156 261 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 PTCHD3Q3KNS1 767 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 ZNF385CQ66K41 422 aaPredicted RBP20.42■□□□□ 0.86
VPS53-216ENST00000574029 AMIGO1Q86WK6 493 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 KLHDC8BQ8IXV7 354 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 ADGRF3Q8IZF5 1079 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 PHC3Q8NDX5 983 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 SSC4DQ8WTU2 575 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 SPATA13Q96N96 652 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 PPP1R2P1Q96PQ5 205 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 TBL1YQ9BQ87 522 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 G3BP2Q9UN86 482 aaKnown RBP20.42■□□□□ 0.86
VPS53-216ENST00000574029 PCDHA13Q9Y5I0 950 aa20.42■□□□□ 0.86
VPS53-216ENST00000574029 C2orf74A8MZ97 194 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 E7EQ34 232 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 CCL22O00626 93 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 KCNN4O15554 427 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 PJA2O43164 708 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 ZNF749O43361 778 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 SEMA7AO75326 666 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 STK10O94804 968 aaKnown RBP20.41■□□□□ 0.86
VPS53-216ENST00000574029 HBQ1P09105 142 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 RBP3P10745 1247 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 PVRP15151 417 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 ACRV1P26436 265 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 PDHA2P29803 388 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 MC4RP32245 332 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 CTNNA1P35221 906 aaKnown RBP20.41■□□□□ 0.86
VPS53-216ENST00000574029 PTPN7P35236 360 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 CDKN1CP49918 316 aaPredicted RBP20.41■□□□□ 0.86
VPS53-216ENST00000574029 EIF3EP60228 445 aaKnown RBP20.41■□□□□ 0.86
VPS53-216ENST00000574029 BOP1Q14137 746 aaKnown RBP20.41■□□□□ 0.86
VPS53-216ENST00000574029 PRR30Q53SZ7 412 aaPredicted RBP20.41■□□□□ 0.86
VPS53-216ENST00000574029 CDHR3Q6ZTQ4 885 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 RBMXL3Q8N7X1 1067 aaKnown RBP20.41■□□□□ 0.86
VPS53-216ENST00000574029 CCDC110Q8TBZ0 833 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms