RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 DPEP2Q9H4A9 486 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 OSGEPL1Q9H4B0 414 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 SARS2Q9NP81 518 aaKnown RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 OGFRQ9NZT2 677 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 SLC24A2Q9UI40 661 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 ADAMTS6Q9UKP5 1117 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 ACSL5Q9ULC5 683 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 CFAP20Q9Y6A4 193 aaKnown RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 RNF215Q9Y6U7 377 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 TRBV23OR9-2A0A075B6M9 112 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 ARHGEF33A8MVX0 844 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 TRIM49D1C9J1S8 452 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 GFYI3L273 518 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 GIPC1O14908 333 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 SNX2O60749 519 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 PSIP1O75475 530 aaKnown RBP9.06□□□□□ -0.96
VPS35-211ENST00000569950 CKMT1AP12532 417 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 CHRM3P20309 590 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 SPRP35270 261 aaPredicted RBP9.06□□□□□ -0.96
VPS35-211ENST00000569950 KCNC1P48547 511 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 ACADVLP49748 655 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 ATXN3P54252 364 aaPredicted RBP9.06□□□□□ -0.96
VPS35-211ENST00000569950 IRF9Q00978 393 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 CFHR1Q03591 330 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 PPP1R3AQ16821 1122 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 MROH9Q5TGP6 573 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 TIFABQ6ZNK6 161 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 NEK10Q6ZWH5 1172 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 OTOAQ7RTW8 1153 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 GLRX5Q86SX6 157 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 PLD6Q8N2A8 252 aaKnown RBP9.06□□□□□ -0.96
VPS35-211ENST00000569950 TMEM151AQ8N4L1 468 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 ARL10Q8N8L6 244 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 LMNTD1Q8N9Z9 388 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 PHC3Q8NDX5 983 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 OR5AR1Q8NGP9 310 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 NETO1Q8TDF5 533 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 DENND1AQ8TEH3 1009 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 ASZ1Q8WWH4 475 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 ZIM3Q96PE6 472 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 POPDC3Q9HBV1 291 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 SLC40A1Q9NP59 571 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 SNX15Q9NRS6 342 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 IGSF5Q9NSI5 407 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 ZNF446Q9NWS9 450 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 TAS2R13Q9NYV9 303 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 SIRPGQ9P1W8 387 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 CPNE7Q9UBL6 633 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 LGALS13Q9UHV8 139 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 SLC39A10Q9ULF5 831 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 PLAAQ9Y263 795 aa9.06□□□□□ -0.96
VPS35-211ENST00000569950 FRYQ5TBA9 3013 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 WDFY3Q8IZQ1 3526 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 KIR2DS5A0A0G2JLQ3 304 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 A0A0G2JNG1 304 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 A0A1W2PPM1 405 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 A0A1W2PQM1 296 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 EME2A4GXA9 379 aaPredicted RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 NEMP2A6NFY4 417 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 PDZK1P1A8MUH7 402 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 KIR2DS3K7RE56 304 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 AGPSO00116 658 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 EIF3FO00303 357 aaPredicted RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 PFDN6O15212 129 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 B4GAT1O43505 415 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 NUDT21O43809 227 aaKnown RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 VPS26AO75436 327 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 C1orf105O95561 183 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 C2P06681 752 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 APOA4P06727 396 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 SBK3P0C264 359 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 MPC1LP0DKB6 136 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 VCLP18206 1134 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 ACP1P24666 158 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 SKIV2L2P42285 1042 aaKnown RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 MSH2P43246 934 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 SLCO1A2P46721 670 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 RAB10P61026 200 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 GPR18Q14330 331 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 KIR2DS5Q14953 304 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 PHKG1Q16816 387 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 SBSNQ6UWP8 590 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 TMPRSS9Q7Z410 1059 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 SLCO6A1Q86UG4 719 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 ALYREFQ86V81 257 aaKnown RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 ZNF761Q86XN6 746 aaPredicted RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 LRRC56Q8IYG6 542 aaPredicted RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 SPATA6LQ8N4H0 392 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 DEFB124Q8NES8 71 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 FLVCR1-AS1Q8TAF5 88 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 RHBDD1Q8TEB9 315 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 JPH3Q8WXH2 748 aaPredicted RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 ASB11Q8WXH4 323 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 TFGQ92734 400 aaPredicted RBP9.05□□□□□ -0.96
VPS35-211ENST00000569950 TMEM159Q96B96 161 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 PTERQ96BW5 349 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 ZBTB9Q96C00 473 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 LINGO1Q96FE5 620 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 C12orf66Q96MD2 445 aa9.05□□□□□ -0.96
VPS35-211ENST00000569950 DUSP23Q9BVJ7 150 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms